Table 2

Pairwise structural alignment of evolutionarily related thermophilic and mesophilic protein pairs for (α/β)8, β-jelly roll, and (α/α)6 folds

Protein length


Fold

Thermophile

Mesophile

RMSD (Å)

Z-score

Thermophile

Mesophile

Sequence identity (%)

Aligned/Gap


(α/β)8

Clostridium thermocellum

(pdb id: 2e4t)

Clostridium acetobutylicum

(pdb id: 3ik2)

0.9

8.3

509

512

60.6

507/4


β-jelly roll

Rhodotermus marinus

(pdb id: 2bw8)

Streptomyces lividans

(pdb id: 2nlr)

1.2

7.2

227

234

33.3

219/9


(α/α)6

Clostridium thermocellum

(pdb id: 1l1y)

Clostridium cellulolyticum

(pdb id: 1g9g)

0.8

8.3

678

629

61.6

612/33


Yennamalli et al. BMC Structural Biology 2011 11:10   doi:10.1186/1472-6807-11-10

Open Data