Table 1 |
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|
List of protein-protein interfaces investigated |
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|
Chain Size (a.a.) |
Interface |
Semi-int. |
NOXclass interface |
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|
PDB |
Chains |
Classification |
1st |
2nd |
both |
Å2 |
a.a. |
1st |
2nd |
||
|
|
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|
Interfaces of Type I |
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|
A |
B |
calcium-binding protein |
90 |
90 |
l80 |
307l |
82 |
37 |
45 |
obligate |
|
|
A |
B |
oxidoreductase |
320 |
320 |
640 |
6254 |
l48 |
74 |
74 |
obligate |
|
|
A |
B |
oxidoreductase |
357 |
357 |
7l4 |
5258 |
l25 |
62 |
63 |
obligate |
|
|
O |
T |
isomerase |
249 |
249 |
498 |
3025 |
75 |
37 |
38 |
obligate |
|
|
A |
B |
hydrolase |
99 |
99 |
l98 |
3436 |
83 |
4l |
42 |
obligate |
|
|
A |
B |
electron transport/peptide |
l05 |
l3 |
ll8 |
l340 |
34 |
24 |
l0 |
non-obligate |
|
|
A |
B |
chlorophyll biosynthesis |
427 |
427 |
854 |
9l78 |
233 |
ll8 |
ll5 |
obligate |
|
|
A |
B |
oxidoreductase |
448 |
448 |
896 |
6777 |
l72 |
86 |
86 |
obligate |
|
|
Interfaces ofType II |
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|
A |
B |
glicosyltransferase |
440 |
440 |
880 |
l744 |
42 |
2l |
2l |
non-biological |
|
|
A |
B |
transcription factor |
63 |
63 |
l26 |
l860 |
44 |
22 |
22 |
obligate |
|
|
A |
B |
de novo protein |
37 |
37 |
74 |
l833 |
43 |
2l |
22 |
obligate |
|
|
A |
B |
leucine zipper |
32 |
32 |
64 |
l565 |
34 |
l7 |
l7 |
non-obligate |
|
|
A |
B |
chemokine |
67 |
67 |
l24 |
l480 |
38 |
l8 |
20 |
obligate |
|
|
A |
B |
circadian clock protein |
l07 |
l07 |
2l4 |
l8l0 |
46 |
23 |
23 |
non-obligate |
|
|
Interfaces ofType III |
|||||||||||
|
B |
A |
signaling protein |
27 |
24 |
5l |
ll53 |
29 |
l5 |
l4 |
obligate |
|
|
A |
B |
antitumor |
l03 |
97 |
200 |
2769 |
72 |
39 |
33 |
obligate |
|
|
A |
B |
tropomyosin |
32 |
32 |
64 |
l586 |
35 |
l7 |
l8 |
obligate |
|
|
A |
C |
DNA-binding protein |
86 |
86 |
l72 |
257l |
64 |
32 |
32 |
obligate |
|
|
E |
I |
proteinase/inhibitor |
275 |
l07 |
382 |
l6l7 |
45 |
3l |
l4 |
non-obligate |
|
|
A |
B |
cell adhesion |
l83 |
l83 |
365 |
628 |
2l |
l0 |
ll |
non-biological |
|
|
A |
B |
signal transduction/peptide |
l95 |
ll |
206 |
l456 |
34 |
25 |
9 |
non-obligate |
|
|
A |
B |
leucine zipper |
32 |
32 |
64 |
l568 |
34 |
l6 |
l8 |
non-obligate |
|
|
|
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|
For each protein complex investigated in this work it is given: the PDB ID; the chains that form the considered interface; the classification, according to PRISM http://prism.ccbb.ku.edu.tr/prism/ webcite; the number of amino acids for the first and second chain listed, and the total number; the size of the interface in Å2 and in number of amino acids involved; the number of interface amino acids in the first and second chain; the classification of the interface into biological obligate, biological non-obligate or non-biological, according to NOXclass [68]. |
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|
Zen et al. BMC Structural Biology 2010 10:26 doi:10.1186/1472-6807-10-26 |
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