Table 2

Locus, SNP, major allele frequency (m.a.f), observed heterozygosity (Ho), expected heterozygosity (He), Fst values and deviations from Hardy-Weinberg equilibrium (p-value) for each genotyped SNP.

locus

SNP

m.a.f.

Ho

He

FST

p-value


Activin receptor IIB

ACVR2B

0.803

0.308

0.294

0.076

0.815

Calpastatin

CAST

0.948

0.096

0.087

0.124

0.742

K-casein

CSN3

0.761

0.314

0.348

0.046

0.660

CathepsinK

CTSK

0.945

0.098

0.102

0.029

0.997

Desmin

DES

0.602

0.452

0.457

0.051

0.999

MHC class II DQA gene

HLA-DQA_1

0.884

0.116

0.191

0.077

0.000*

MHC class II DQA gene

HLA-DQA_2

0.672

0.158

0.400

0.102

0.000*

MHC class II DRB gene

HLA-DRB

0.838

0.226

0.258

0.057

0.077

Fatty acid-binding protein 4

FABP4

0.992

0.012

0.016

0.009

0.096

Fibronectin

FN1

0.811

0.238

0.292

0.050

0.309

Growth differentiation factor 9B

GDF9

0.808

0.215

0.298

0.043

0.004*

Growth hormone receptor

GHR

0.514

0.463

0.495

0.011

0.794

Interleukin-4

IL4

0.508

0.440

0.432

0.144

0.932

Interleukin-2

IL2_1

0.983

0.033

0.032

0.008

1.000

Interleukin-2

IL2_2

0.839

0.243

0.246

0.096

0.964

Integrin B1

ITGB1

0.637

0.422

0.452

0.025

0.947

Beta-lactoglobulin

LGB

0.757

0.338

0.341

0.078

0.998

Melatonin

MTNR1A

0.558

0.453

0.451

0.093

0.865

Myostatin

GDF8

0.942

0.098

0.106

0.031

0.940

Prion protein

PRNP_1

0.624

0.422

0.439

0.070

0.965

Prion protein

PRNP_2

0.649

0.408

0.431

0.058

0.641

Toll-like receptor 4

TLR4

0.571

0.441

0.475

0.033

0.231

microsatellite

U80

0.838

0.254

0.262

0.037

0.996

Mean

0.706

0.272

0.300

0.059


*: Highly significant

Pariset et al. BMC Ecology 2009 9:20   doi:10.1186/1472-6785-9-20

Open Data