Table 2

Comparison of miRNA fold changes in a number of brain derived cell lines by Microarray and RT-PCR

Cell line

miRNA

Fold Change by Microarray

Fold Change by qRT-PCR


EOC 13.31

miR-137

-9.9

-38.3

miR-222

137

4153

EOC 20

miR-137

-1.7

-19.6

miR-222

113

290

C8-B4

miR-137

-3.5

-10.7

miR-222

17.9

102

NB41A3

miR-137

1.01

-3.7

miR-222

ND

13.9

SK-N-FI

miR-137

11.1

11.4

miR-222

ND

1.3

IMR-32

miR-137

-2.0

1.04

miR-222

1.7

12.1


The fold change in expression was determined for six brain derived cell lines in comparison with their expression in the cell line N2a.

ND – miRNA was not detected using this methodology

Saba and Booth BMC Biotechnology 2006 6:47   doi:10.1186/1472-6750-6-47

Open Data