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Open Access Methodology article

The limits of log-ratios

Vasily Sharov, Ka Y Kwong, Bryan Frank, Emily Chen, Jeremy Hasseman, Renee Gaspard, Yan Yu, Ivana Yang and John Quackenbush*

BMC Biotechnology 2004, 4:3 doi:10.1186/1472-6750-4-3

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Methodology article   Open Access

Novel design and controls for focused DNA microarrays: applications in quality assurance/control and normalization for the Health Canada ToxArray™

Carole L Yauk, Andrew Williams, Sherri Boucher, Lynn M Berndt, Gu Zhou, Jenny L Zheng, Andrea Rowan-Carroll, Hongyan Dong, Iain B Lambert, George R Douglas, Craig L Parfett BMC Genomics 2006, 7:266 (19 October 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access Highly Accessed

Expression profiling of laser-microdissected intrapulmonary arteries in hypoxia-induced pulmonary hypertension

Grazyna Kwapiszewska, Jochen Wilhelm, Stephanie Wolff, Isabel Laumanns, Inke R Koenig, Andreas Ziegler, Werner Seeger, Rainer M Bohle, Norbert Weissmann, Ludger Fink Respiratory Research 2005, 6:109 (19 September 2005)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Method   Open Access

Model selection and efficiency testing for normalization of cDNA microarray data

Matthias Futschik, Toni Crompton Genome Biology 2004, 5:R60 (30 July 2004)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

This study presents two novel normalization schemes for cDNA microarrays. They are based on iterative local regression and optimization of model parameters by generalized cross-validation.

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