|
Results of TDT and PDT |
||||||||
| rs numbers |
Allele |
Trans* |
Not Trans** |
TDT P value (corrected) |
PDT P value (corrected) |
Gene Name |
chr |
SNP position |
|
|
||||||||
| rs717227 |
T |
70 |
42 |
0.007818 (1) |
0.009023 (1) |
CHRM3 |
1 |
intron |
| rs1449504 |
C |
54 |
21 |
0.0001059 (0.44) |
0.002627 (1) |
LRP1B |
2 |
intron |
| rs1370497 |
A |
35 |
60 |
0.009876 (1) |
0.006856 (1) |
FMNL2 |
2 |
intron |
| rs920891 |
A |
19 |
36 |
0.02082 (1) |
0.008041 (1) |
3 |
||
| rs1567058 |
T |
11 |
30 |
0.002486 (1) |
0.007963 (1) |
ARL6 |
3 |
Intron |
| rs1317244 |
A |
48 |
77 |
0.009169 (1) |
0.007166 (1) |
CD200 |
3 |
Intron |
| rs1402276 |
A |
53 |
30 |
0.01105 (1) |
0.00575 (1) |
SCHIP1 |
3 |
Intron |
| rs889319 |
T |
53 |
80 |
0.01881 (1) |
0.009975 (1) |
RAI14 |
5 |
Intron |
| rs40207 |
T |
25 |
54 |
0.0009624 (0.99) |
0.003361 (1) |
5 |
||
| rs1552104 |
T |
76 |
33 |
0.00002976 (0.15) |
0.002873 (1) |
5 |
||
| rs1498252 |
A |
58 |
32 |
0.005775 (1) |
0.002604 (1) |
6 |
||
| rs2894891 |
A |
65 |
42 |
0.0256 (1) |
0.005798 (1) |
6 |
||
| rs1158747 |
T |
78 |
39 |
0.0002723 (0.78) |
0.0008586 (1) |
LAMA4 |
6 |
Intron |
| rs169902 |
A |
33 |
51 |
0.04865 (1) |
0.006104 (1) |
7 |
||
| rs1202169 |
A |
74 |
44 |
0.005487 (1) |
0.006487 (1) |
ABCB1 |
7 |
Intron |
| rs1419607 |
A |
43 |
75 |
0.003033 (1) |
0.005659 (1) |
7 |
||
| rs901592 |
T |
37 |
70 |
0.001298 (1) |
0.003353 (1) |
8 |
||
| rs9071 |
A |
36 |
59 |
0.01771 (1) |
0.007423 (1) |
LRRC14 |
8 |
3UTR |
| rs1250288 |
T |
58 |
36 |
0.02263 (1) |
0.005251 (1) |
9 |
||
| rs1361800 |
T |
38 |
15 |
0.001315 (1) |
0.002218 (1) |
SORCS3 |
10 |
Intron |
| rs1034178 |
T |
75 |
42 |
0.002129 (1) |
0.006029 (1) |
SORCS3 |
10 |
Intron |
| rs2011505 |
T |
11 |
28 |
0.005631 (1) |
0.004738 (1) |
NCAM1 |
11 |
intron |
| rs3345 |
T |
58 |
30 |
0.002604 (1) |
0.006276 (1) |
HNT |
11 |
intron |
| rs2034954 |
A |
36 |
68 |
0.001559 (1) |
0.004317 (1) |
12 |
||
| rs954108 |
T |
13 |
28 |
0.01778 (1) |
0.006656 (1) |
13 |
||
| rs1462256 |
A |
50 |
79 |
0.01034 (1) |
0.009023 (1) |
14 |
||
| rs725463 |
T |
65 |
40 |
0.01423 (1) |
0.00625 (1) |
15 |
||
| rs1984372 |
A |
58 |
36 |
0.02263 (1) |
0.008914 (1) |
18 |
||
| rs1943919 |
T |
37 |
65 |
0.005266 (1) |
0.008719 (1) |
18 |
||
| rs2012035 |
C |
30 |
56 |
0.004717 (1) |
0.009644 (1) |
19 |
||
| rs542419 |
T |
59 |
38 |
0.0323 (1) |
0.007665 (1) |
19 |
||
| rs1477340 |
T |
75 |
43 |
0.003033 (1) |
0.001527 (1) |
NPAS1 |
19 |
intron |
| rs714022 |
A |
50 |
29 |
0.01746 (1) |
0.001986 (1) |
ATXN10 |
22 |
intron |
| rs737822 |
A |
49 |
26 |
0.00742 (1) |
0.001984 (1) |
22 |
||
| rs728591 |
A |
42 |
70 |
0.007818 (1) |
0.004015 (1) |
22 |
||
|
* Number of alleles transmitted to the affected children. ** Number of alleles not transmitted to the affected children. Bonferroni correction was applied for multiple testing | ||||||||
Enomoto et al. BMC Dermatology 2007 7:5 doi:10.1186/1471-5945-7-5 |
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