Table 3

Classification accuracy and chi-square test for 20 SNPs with the highest training HMSS by LDA for predicting psoriasis

Chr

LDA

sIB


SNP_RS

Training HMSS

Test HMSS

Training HMSS

Test HMSS

P-value(GRU) *

P-value(ADO) *


rs12191877

6

0.611

0.315

0.611

0.668

0

0

rs2894207

6

0.603

0.387

0.603

0.657

0

1.11 × 10-16

rs3130517

6

0.600

0.414

0.600

0.608

0

4.33 × 10-15

rs2394895

6

0.598

0.425

0.598

0.620

0

1.13 × 10-14

rs2844627

6

0.598

0.413

0.598

0.627

0

0

rs3130713

6

0.597

0.400

0.597

0.599

5.55 × 10-16

1.52 × 10-14

rs3130467

6

0.596

0.415

0.596

0.605

1.11 × 10-16

2.73 × 10-14

rs9468933

6

0.595

0.321

0.595

0.656

0

0

rs7773175

6

0.585

0.416

0.585

0.604

0

1.33 × 10-15

rs6861600

5

0.569

0.456

0.569

0.544

7.48 × 10-4

2.32 × 10-8

rs9380237

6

0.569

0.405

0.569

0.628

0

1.38 × 10-10

rs6887695

5

0.568

0.454

0.568

0.546

7.46 × 10-4

3.96 × 10-8

rs3823418

6

0.568

0.342

0.120

0.142

0

1.11 × 10-16

rs1265078

6

0.565

0.434

0.565

0.561

5.29 × 10-11

3.44 × 10-12

rs2647087

6

0.564

0.443

0.564

0.573

1.25 × 10-8

1.21 × 10-8

rs2858333

6

0.564

0.444

0.564

0.572

5.65 × 10-8

1.23 × 10-8

rs3132965

6

0.564

0.434

0.564

0.574

2.57 × 10-9

6.62 × 10-9

rs10947208

6

0.563

0.442

0.563

0.554

2.77 × 10-5

3.71 × 10-8

rs9266846

6

0.562

0.458

0.562

0.548

1.31 × 10-5

3.03 × 10-7

rs497150

22

0.562

0.486

0.562

0.490

0.22062

1.67 × 10-5


* cut-off P-value = 1.11 × 10-7 (0.05/451724)

Fang et al. BMC Dermatology 2011 11:1   doi:10.1186/1471-5945-11-1

Open Data