Table 2

Details of NR3C1 (GR) SNPs analysed in this study
dbSNP rs # location (UCSC build Hg19, Feb 2009 location, description, (common name) poly-morphism (major/minor allele) MAF HWE p-value
rs10052957 142786701 5' UTR; 2656 bases upstream of exon 1B (Tth111l) C/T 0.320 1
rs72801094 142785905 5' UTR; 1860 bases upstream of exon 1B A/G 0.046 0.177
rs5871845 142783949 5' UTR; exon 1B -/C 0.052 1
rs10482614 142782402 5' UTR; between exon 1 C and exon 1 H G/A 0.134 0.012
rs10482616 142781567 5' UTR; between exon 1 H and exon 2 G/A 0.113 0.342
rs4634384 142780697 5' UTR; between exon 1 H and exon 2 G/A 0.490 0.687
rs6190 142780337 exon 2; non-synonymous (R23K) G/A 0.021 1
rs1800445 142779311 exon; non-synonymous (N363S) A/G 0 -
rs41423247 142778575 intron; between exon 2 and exon 3, 645 bases downstream of exon 2 (Bcl1) C/G 0.345 0.825
rs6196 142661490 exon 9α; synonymous (N766N) T/C 0.139 0.017
rs6198 142657621 3' UTR; inside exon 9β (A369G) A/G 0.170 0.065

Details of genotyped SNPs. Abbreviations: UCSC = University of California Santa Cruz, MAF = minor allele frequency, HWE = Hardy-Weinberg Equilibrium, UTR = untranslated region.

Sinclair et al.

Sinclair et al. BMC Psychiatry 2012 12:84   doi:10.1186/1471-244X-12-84

Open Data