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Primers used in fragment analysis |
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| Gene |
Forward primer |
Reverse primer |
Microsatellite Repeat |
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| HLA A 4th ex |
CCTGAATTTTCTGACTCTTCCCGT |
GTTTCTTTCCCGCTGCCAGGTCAGTGT |
7(C) |
| HLA A 5th ex |
CCATCGTGGGCATCATTG |
GTTTCTTTCAGTGAGACAAGAAATCTC |
3(GGA) |
| HLA B 2nd ex |
GCTTCATCTCAGTGGGCTAC |
GTTTCTTCTCGCTCTGGTTGTA |
3(GA) + 3(CA) |
| β2m 1st ex |
GGCTGGGCACGCGTTTAAT |
GTTTCTTAGGGAGAGAAGGACCAGAG |
4(CT) |
| β2m 2nd ex (1) |
TACCCTGGCAATATTAATGTG |
GTTTCTTGATAGAAAGACCAGTCCTTGC |
4(GA) + 5(A) |
| β2m 2nd ex (2) |
CTTACTGAAGAATGGAGAGAG |
GTTTCTTGACTACTCATACACAACTTTCA |
5(A) |
| TAP1 1st ex |
TAAATGGCTGAGCTTCTCGC |
GTTTCTTAGAGCTAGCCATTGGCA |
5(C) |
| TAP1 3rd ex |
ACAGCCACTTGCAGGGAG |
GTTTCTTTATGAACAGTACATGGCGTAT |
5(T) |
| TAP1 8th ex |
CTGCCCTGCTGCAGAATCTG |
GTTTCTTCAAGCCACCTGCTTCCAT |
5(G) |
| TAP1 10th ex |
CTCTGCAGAGGTAGACGAGG |
GTTTCTTATTAAGAAGATGACTGCCTCAC |
5(G) |
| TAP1 11th ex |
AGCACCTCAGCCTGGTGGA |
GTTTCTTGCAGGTCTGAGAAGGCTTTC |
6(G) + 5(A) |
| TAP2 2nd ex |
TTCCTCAAGGGCTGCCAGGAC |
GTTTCTTGCTCCAAGGGGCTGAAG |
6(C) |
| TAP2 9th ex |
CCTACGTCCTGGTGAGGTGA |
GTTTCTTCTGGCTGTGCAGGTAGC |
5(G) |
| Tapasin 2nd ex |
TTGGTTCGTGGAGGATGC |
GTTTCTTCCTAGAGACTCACCGTGTAC |
5(G) |
| Tapasin 3rd ex |
CTTCCTTCTCTACACTCAGACC |
GTTTCTTAGGACTGGGCTGGATATGC |
5(C) |
| Tapasin 4th ex |
CCTGTCTTCCTCAGTGGTAC |
GTTTCTTGAGCAGATGTCCCTTACCC |
6(C) |
| Tapasin 5th ex |
TGCTCATTTCGTCCTCTTTCC |
GTTTCTTGTTCCCACTCCACCTCCAG |
5(G) |
| Calnexin 7th ex |
GAAGGATCAGTTCCATGACAAG |
GTTTCTTCTGCATCTGGCCTCTTAGC |
5(A) |
| Calnexin 8th ex |
TCTGCTCAATGACATGACTCC |
GTTTCTTTGAAGACAGTTCCCCAAGAC |
5(A) |
| Calnexin 11th ex |
AACCTTTCAGAATGACTCCTTTTAG |
GTTTCTTCAAGCAGCAAACACGAACC |
8(T) |
| Calreticulin 3rd ex |
CTACCGTCCCGTCTCAGG |
GTTTCTTTCTGTCTGGTCCAAACTATTAGG |
5(G) |
| Calreticulin 6th ex |
GACAAGCCCGAGCATATCC |
GTTTCTTCACCTTGTACTCAGGGTTCTG |
5(C) |
| ERp57 5th ex |
CACTTATTGCTTCTTCCTTGTG |
GTTTCTTAATACTTGGTCAGGAGATTCAAC |
6(T) |
| ERp57 6th ex |
CTTCTGCTATCTGCCTACTGAG |
GTTTCTTTCAAGCAAATAAATCCCAGACAAG |
6(A) |
| ERp57 13th ex |
ACTTTTAAGCTGATCTTTCTGTTTT |
GTTTCTTTTAGAGATCCTCCTGTGCCTT |
6(C) |
| LMP2 2nd ex |
GAGGGCATCAAGGCTGTTC |
GTTTCTTGCAGACACTCGGGAATCAG |
5(G) |
| LMP2 6th ex |
CCCTCTCTCCAACTTGAAACC |
GTTTCTTTGTAATAGTGACCAGGTAGATGAC |
5(G) |
| LMP7 1st ex |
GGCTTTCGCTTTCACTTCC |
GTTTCTTGAGATCGCATAGAGAAACTGTAG |
6(C) |
Dierssen et al. BMC Cancer 2007 7:33 doi:10.1186/1471-2407-7-33 |
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