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Recurrent amplicons in breast tumors with examples of some candidate oncogenes |
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| Tumors |
Chr. |
Proximal flanking clone |
Start (bp) |
Distal flanking clone |
End (bp) |
Size (Mb) |
Candidate Genes |
|
|
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| S0257; S1508 |
1 |
RP11-235B24 |
50120611 |
CTD-2010C4 |
64641284 |
14.5 |
JUN |
| S0021; S0065; S0127; S0132; S1534; S1539 |
8 |
RP11-210F15 |
36452678 |
RP11-262I23 |
39744917 |
3.3 |
BAG1; FGFR1; TACC1 |
| S0013; S0257; S1598 |
8 |
RP11-128G18 |
127638988 |
RP11-227F7 |
131013284 |
3.4 |
MYC; WISP1 |
| S0132; S0394; S1524 |
11 |
CTD-2115C17 |
32421376 |
RP11-18B9 |
40252688 |
7.8 |
TRAF6 |
| S0050; S0065; S0081; S0132; S0252; S0303; S1534; S1539; S1598 |
11 |
CTD-2080I19 |
68483419 |
RP11-98G24 |
76964746 |
8.5 |
CCND1; FGF4; EMS1; PAK1 |
| S0184; S1508 |
12 |
12pter |
0 |
RP11-272L6 |
5221281 |
5.2 |
CCND2; FGF6; DYRK4 |
| S0051; S0052; S0122; S1522 |
12 |
RP11-18B8 |
63882712 |
RP11-92P22 |
74052886 |
10.2 |
MDM2; DYRK2; YEATS4; HELB; |
| S0021; S0043; S0052; S0059; S0257; S0394; S1511; S1522; S1526; S1539 |
17 |
RP11-58O8 |
34147697 |
RP11-87N6 |
38680670 |
4.5 |
STARD3; ERBB2; GRB7; TOP2A; MMP28 |
| S0043; S0104; S0394 |
17 |
RP11-110H20 |
47546526 |
RP11-481C4 |
49705574 |
2.2 |
IMP-1; ITGA3 |
| S0001; S0021; S0043; S0104; S1508; S1511 |
17 |
RP5-1073F15 |
58499308 |
CTB-244K7 |
64939230 |
6.4 |
BRIP1; GH1; GH2; MAP3K3 |
| S0127; S0257; S0269 |
18 |
RP11-7E5 |
10817140 |
RP11-10G8 |
17272427 |
6.5 |
PTPN2 |
| S0021; S0043; S0050; S0051; S0055; S0059; S0122; S1522; S1545; S1598 |
20 |
RP11-169A6 |
44424925 |
RMC20P179 |
62702798 |
18.3 |
CYP24; ZNF217; STK6 |
Fridlyand et al. BMC Cancer 2006 6:96 doi:10.1186/1471-2407-6-96 |
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