Research article  

Gene expression relationship between prostate cancer cells of Gleason 3, 4 and normal epithelial cells as revealed by cell type-specific transcriptomes

Laura E Pascal, Ricardo ZN Vêncio, Laura S Page, Emily S Liebeskind, Christina P Shadle, Pamela Troisch, Bruz Marzolf, Lawrence D True, Leroy E Hood, Alvin Y Liu BMC Cancer 2009, 9:452 (18 December 2009)

Abstract | Full text | PDF | PubMed

Research article  

Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays

Joshua S Bloom, Zia Khan, Leonid Kruglyak, Mona Singh, Amy A Caudy BMC Genomics 2009, 10:221 (12 May 2009)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | 1 comment

Research article  

Validation of oligoarrays for quantitative exploration of the transcriptome

Vigdis Nygaard, Fang Liu, Marit Holden, Winston P Kuo, Jeff Trimarchi, Lucila Ohno-Machado, Connie L Cepko, Arnoldo Frigessi, Ingrid K Glad, Mark Wiel, Eivind Hovig, Heidi Lyng BMC Genomics 2008, 9:258 (30 May 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research article  

Correlation of mRNA and protein levels: Cell type-specific gene expression of cluster designation antigens in the prostate

Laura E Pascal, Lawrence D True, David S Campbell, Eric W Deutsch, Michael Risk, Ilsa M Coleman, Lillian J Eichner, Peter S Nelson, Alvin Y Liu BMC Genomics 2008, 9:246 (23 May 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Database  

The urologic epithelial stem cell database (UESC) – a web tool for cell type-specific gene expression and immunohistochemistry images of the prostate and bladder

Laura E Pascal, Eric W Deutsch, David S Campbell, Martin Korb, Lawrence D True, Alvin Y Liu BMC Urology 2007, 7:19 (11 December 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research article  

A comparison of microarray and MPSS technology platforms for expression analysis of Arabidopsis

Junfeng Chen, Vikas Agrawal, Magnus Rattray, Marilyn AL West, Dina A St Clair, Richard W Michelmore, Sean J Coughlan, Blake C Meyers BMC Genomics 2007, 8:414 (12 November 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research article  

Comparison of hybridization-based and sequencing-based gene expression technologies on biological replicates

Fang Liu, Tor-Kristian Jenssen, Jeff Trimarchi, Claudio Punzo, Connie L Cepko, Lucila Ohno-Machado, Eivind Hovig, Winston Patrick Kuo BMC Genomics 2007, 8:153 (7 June 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research article  

A meta-analysis of kidney microarray datasets: investigation of cytokine gene detection and correlation with rt-PCR and detection thresholds

Walter D Park, Mark D Stegall BMC Genomics 2007, 8:88 (30 March 2007)

Abstract | Full text | PDF | PubMed

Research article  

Differential expression of CD10 in prostate cancer and its clinical implication

Marc A Dall'Era, Lawrence D True, Andrew F Siegel, Michael P Porter, Tracy M Sherertz, Alvin Y Liu BMC Urology 2007, 7:3 (2 March 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research article  

Establishment of the epithelial-specific transcriptome of normal and malignant human breast cells based on MPSS and array expression data

Anita Grigoriadis, Alan Mackay, Jorge S Reis-Filho, Dawn Steele, Christian Iseli, Brian J Stevenson, C Victor Jongeneel, Haukur Valgeirsson, Kerry Fenwick, Marjan Iravani, Maria Leao, Andrew JG Simpson, Robert L Strausberg, Parmjit S Jat, Alan Ashworth, A Munro Neville, Michael J O'Hare Breast Cancer Research 2006, 8:R56 (2 October 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Methodology article  

Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach

Matthew N Bainbridge, René L Warren, Martin Hirst, Tammy Romanuik, Thomas Zeng, Anne Go, Allen Delaney, Malachi Griffith, Matthew Hickenbotham, Vincent Magrini, Elaine R Mardis, Marianne D Sadar, Asim S Siddiqui, Marco A Marra, Steven JM Jones BMC Genomics 2006, 7:246 (29 September 2006)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central