Table 2

Alignment and coverage statistics by sample
Total Reads Total Mapped % Covered at 20x Average Coverage % PCR duplicates
Sample 1 tumor 304,589,893 271,320,952 92% 210x 7.6
Sample 1 germline 295,105,503 263,056,333 90% 199x 8.9
Sample 1 mother 195,514,828 193,745,082 86% 147x 32.5
Sample 1 father 203,906,150 202,199,642 85% 145x 36.2
Sample 2 tumor 204,158,706 142,291,992 84% 141x 7.7
Sample 2 germline 243,212,434 220,803,923 82% 107x 14.5
Sample 3 tumor 185,947,244 127,115,774 83% 128x 7.6
Sample 3 germline 252,335,878 204,463,822 83% 111x 16.0
Sample 4 tumor 214,824,644 157,010,833 85% 149x 7.8
Sample 4 germline 239,034,182 215,730,577 83% 108x 15.7

Chang et al.

Chang et al. BMC Cancer 2013 13:55   doi:10.1186/1471-2407-13-55

Open Data