Table 3

Genes differentially expressed in GC specimens with higher levels of Snail expression
PROBE_ID SYMBOL NAME
Genes upregulated in specimens with higher levels (≥75%) of Snail expression (P< 0.05)
ILMN_2374449 SPP1 Secreted phosphoprotein 1
ILMN_2337923 TPD52L1 Tumor protein D52-like 1
ILMN_1679838 WBP5 WW domain binding protein 5
ILMN_2078592 C6orf105 Androgen-dependent TFPI-regulating protein
ILMN_1714383 TPD52L1 Tumor protein D52-like 1
ILMN_1674817 C1orf115 Chromosome 1 open reading frame 115
ILMN_1813561 SCIN Scinderin
ILMN_1759818 SORL1 Sortilin-related receptor, L(DLR class) A repeats containing
ILMN_1745686 MFHAS1 Malignant fibrous histiocytoma amplified sequence 1
ILMN_2060115 SORL1 Sortilin-related receptor, L(DLR class) A repeats containing
ILMN_2337263 PKIB Protein kinase (cAMP-dependent, catalytic) inhibitor beta
ILMN_2173835 FTHL3 Ferritin, heavy polypeptide 1 pseudogene 3
ILMN_1791057 IFNAR2 Interferon (alpha, beta and omega) receptor 2
ILMN_1807114 LOC255620 Similar to unc-93 homolog B1 (C. elegans), transcript variant 1 (LOC255620), mRNA
ILMN_1669393 GGT1 Gamma-glutamyltransferase 1
ILMN_1685798 MAGEA6 Melanoma antigen family A, 6
ILMN_3269395 GGT2 Gamma-glutamyltransferase 2
ILMN_1669833 SH2B2 SH2B adaptor protein 2
ILMN_3238534 LOC100133817 Hypothetical protein LOC100133817
ILMN_2099315 TRPM8 Transient receptor potential cation channel, subfamily M, member 8
ILMN_3298065 LOC729195 Similar to apical early endosomal glycoprotein
ILMN_1717726 FLJ43752 Long intergenic non-protein coding RNA 336
ILMN_1670452 ANKRD20A1 Ankyrin repeat domain 20 family, member A1
ILMN_3201060 LOC100132655 Hypothetical protein LOC100132655
ILMN_3282829 LOC727913 Similar to iduronate 2-sulfatase (Hunter syndrome)
ILMN_2339691 SYVN1 Synovial apoptosis inhibitor 1, synoviolin
ILMN_1785549 SLC30A2 Solute carrier family 30 (zinc transporter), member 2
ILMN_3191898 LOC100129630 Hypothetical LOC100129630
ILMN_1704204 LOC642204 Ankyrin repeat domain-containing protein 26-like
ILMN_1682280 LOC647753 Hypothetical protein LOC647753
ILMN_3201944 LOC646438 Hypothetical LOC646438
ILMN_2233314 SPANXA1 Sperm protein associated with the nucleus, X-linked, family member A1
ILMN_3305980 NS3BP NS3BP
ILMN_1747850 CRIM2 Kielin/chordin-like protein
ILMN_1700590 LOC645590 Similar to cAMP-dependent protein kinase type I-beta regulatory subunit
ILMN_1766316 FLJ32679 Golgin-like hypothetical protein LOC440321
ILMN_1890741 Hs.552561 Pancreatic islet cDNA clone hbt09690 3, mRNA sequence
ILMN_3308255 MIR33A MicroRNA 33a
ILMN_1815716 LMLN Leishmanolysin-like (metallopeptidase M8 family)
ILMN_1654945 DNMT3A DNA (cytosine-5-)-methyltransferase 3 alpha
ILMN_2256050 SERPINA1 Serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1
ILMN_1759487 EGFLAM EGF-like, fibronectin type III and laminin G domains
ILMN_1760410 LOC653086 Similar to RAN-binding protein 2-like 1 isoform 2
ILMN_1668969 MIXL1 Mix paired-like homeobox
ILMN_3279757 LOC100132532 Hypothetical protein LOC100132532
ILMN_1715372 CAMKK1 Calcium/calmodulin-dependent protein kinase kinase 1, alpha
ILMN_1731370 C9orf84 Chromosome 9 open reading frame 84
ILMN_1679049 COLEC12 Collectin sub-family member 12
ILMN_1676011 LOC642561 Similar to FXYD domain-containing ion transport regulator 6
ILMN_1815442 LOC652875 Similar to Protein KIAA0685
ILMN_1737213 LOC653641 Golgin A6 family, member C
ILMN_1793529 LOC389031 Myosin
ILMN_1709319 C13orf39 Methyltransferase like 21C
ILMN_2284930 FLJ40296 Proline rich 20A
ILMN_1678310 TXNRD3IT1 Thioredoxinreductase 3 neighbor
ILMN_1806052 UNC119 unc-119 homolog (C. elegans)
ILMN_2242345 LPAL2 Lipoprotein, Lp(a)-like 2, pseudogene
ILMN_1687725 C17orf41 ATPase family, AAA domain containing 5
ILMN_1886395 Hs.574341 Soares_multiple_sclerosis_2NbHMSP Homo sapienscDNA clone IMAGp998G11618; IMAGE:126826, mRNA sequence
ILMN_3308612 MIR149 MicroRNA 149
ILMN_1811103 PCDHGB5 Protocadherin gamma subfamily B, 5
ILMN_1736104 LOC645218 Hypothetical LOC645218
ILMN_1824307 Hs.571901 Full-length cDNA clone CS0DF20YK03 of Fetal brain of Homo sapiens
ILMN_1803871 RHO Rhodopsin
ILMN_3237314 LOC732402 Similar to butyrate-induced transcript 1
ILMN_1714191 LOC652682 Similar to Y46G5A.1a
ILMN_3246580 LOC730429 e3 ubiquitin-protein ligase UBR5-like
ILMN_3229028 LOC728586 hCG1981531
ILMN_3239734 LOC100134822 Uncharacterized LOC100134822
ILMN_1769785 SH3MD4 SH3 domain containing ring finger 3
ILMN_3309864 MIR449B MicroRNA 449b
ILMN_1653927 SNORD83A small nucleolar RNA, C/D box 83A
ILMN_3200648 LOC151174 uncharacterized LOC151174
ILMN_1652023 AGFG2 ArfGAP with FG repeats 2
ILMN_1749776 LOC642816 Similar to hypothetical protein LOC284701
ILMN_1671985 LOC646829 Hypothetical protein LOC646829
ILMN_1684499 LOC650373 Similar to deubiquitinating enzyme 3
ILMN_1676452 ADAMTS14 ADAM metallopeptidase with thrombospondin type 1 motif, 14
ILMN_1723855 LOC390427 Similar to TBP-associated factor 15 isoform 1
ILMN_1658019 LOC648447 Hypothetical protein LOC648447
ILMN_3227291 LOC728701 Hypothetical LOC728701
ILMN_1767469 LOC650781 Hypothetical protein LOC650781
Genes downregulated in specimens with higher levels (≥75%) of Snail expression (P< 0.05)
ILMN_1796946 ALLC Allantoicase
ILMN_3248008 LOC442308 Tubulin, beta class I pseudogene
ILMN_3230623 FLJ40039 Uncharacterized LOC647662
ILMN_1676596 LOC642263 Hypothetical LOC642263
ILMN_3165745 ERCC-00084 Synthetic construct clone NISTag41 external RNA control sequence
ILMN_3242420 HCG8 HLA complex group 8
ILMN_1783827 LOC649397 Similar to Tripartite motif protein 44 (DIPB protein) (Mc7 protein)
ILMN_3244733 LOC100131898 Hypothetical protein LOC100131898
ILMN_3195376 LOC100130092 Similar to MAPRE1 protein
ILMN_2123683 FLJ43763 Uncharacterized LOC642316
ILMN_1730601 FAM194A Family with sequence similarity 194, member A
ILMN_1652015 LOC647451 Similar to heat shock protein 90Bf
ILMN_1784349 LOC647191 Similar to Kinase suppressor of ras-1 (Kinase suppressor of ras) (mKSR1) (Hb protein)
ILMN_3251375 WBP11P1 WW domain binding protein 11 pseudogene 1
ILMN_1911713 Hs.550068 UI-E-EJ1-ajn-i-16-0-UI.s1 UI-E-EJ1 Homo sapienscDNA clone UI-E-EJ1-ajn-i-16-0-UI.3, mRNA sequence
ILMN_1888057 Hs.554470 nc63e05.r1 NCI_CGAP_Pr1 Homo sapienscDNA clone IMAGE:745952, mRNA sequence
ILMN_3229818 LOC729828 Misc_RNA (LOC729828), miscRNA
ILMN_1654987 HCG2P7 HLA complex group 2 pseudogene 7
ILMN_1683453 FRAS1 Fraser syndrome 1
ILMN_1840493 Hs.112932 ag03b01.s1 Soares_testis_NHTHomo sapienscDNA clone IMAGE:1056169 3, mRNA sequence
ILMN_1860820 Hs.126468 tm27h01.x1 Soares_NFL_T_GBC_S1 Homo sapienscDNA clone IMAGE:2157841 3, mRNA sequence
ILMN_3227213 LOC728940 Hypothetical LOC728940
ILMN_3247774 LOC100134235 Similar to hCG1642820
ILMN_1902571 Hs.557622 tw46h08.x1 NCI_CGAP_Ut1 Homo sapienscDNA clone IMAGE:2262783 3 similar to contains PTR5.b2 PTR5 repetitive element, mRNA sequence
ILMN_2384405 RTBDN Retbindin
ILMN_3234879 LOC653786 Otoancorinpseudogene
ILMN_1914891 Hs.334272 RST40254 Athersys RAGE Library Homo sapienscDNA, mRNA sequence
ILMN_3272356 LOC100129315 Hypothetical protein LOC100129315 (LOC100129315), mRNA
ILMN_3230388 LOC100130855 Hypothetical protein LOC100130855( LOC100130855), mRNA
ILMN_1656553 LOC653160 Hypothetical protein LOC653160, transcript variant (LOC653160), mRNA
ILMN_1700935 HAS2 Hyaluronan synthase 2
ILMN_1733783 LOC652790 Similar to anaphase promoting complex subunit 1
ILMN_2209221 DMRT1 Doublesex and mab-3 related transcription factor 1
ILMN_1815118 ZNF554 Zinc finger protein 554
ILMN_3293210 LOC100131031 Similar to hCG2041190 (LOC100131031), mRNA
ILMN_1703222 FRS2 Fibroblast growth factor receptor substrate 2
ILMN_1732807 GPRC6A G protein-coupled receptor, family C, group 6, member A
ILMN_1875332 Hs.545527 he15g04.x1 NCI_CML1 Homo sapienscDNA clone IMAGE:2919216 3 similar to contains element PTR5 repetitive element
ILMN_3235789 BPY2C Basic charge, Y-linked, 2C
ILMN_3203116 LOC100131961 Misc_RNA (LOC100131961), miscRNA
ILMN_2198802 FAM22G Family with sequence similarity 22, member G
ILMN_1858700 Hs.538558 zh20c06.s1 Soares_pineal_gland_N3HPG Homo sapienscDNA clone IMAGE:412618 3, mRNA sequence
ILMN_1873107 Hs.282800 AV649053 GLC Homo sapienscDNA clone GLCBPH07 3, mRNA sequence
ILMN_1891673 Hs.164254 hb73c02.x1 NCI_CGAP_Ut2 Homo sapienscDNA clone IMAGE:2888834 3, mRNA sequence
ILMN_3206632 LOC643802 u3 small nucleolarribonucleoprotein protein MPP10-like
ILMN_1883034 Hs.546089 RST29145 Athersys RAGE Library Homo sapienscDNA, mRNA sequence
ILMN_2373335 LIG3 Ligase III, DNA, ATP-dependent
ILMN_3239639 CD200R1L CD200 receptor 1-like
ILMN_1870857 Hs.148168 Barstead spleen HPLRB2 Homo sapienscDNA clone IMAGp998L113601 ; IMAGE:1425178, mRNA sequence
ILMN_1813909 CRSP2 Mediator complex subunit 14
ILMN_1891885 Hs.332843 qg83a07.x1 Soares_NFL-T_GBC_S1 Homo sapienscDNA clone IMAGE:1841748, mRNA sequence
ILMN_3235126 LOC100133558 Similar to hCG1642170
ILMN_1677186 MGC52498 Family with sequence similarity 159, member A
ILMN_3252608 HCRP1 Hepatocellular carcinoma-related HCRP1
ILMN_1652871 PLSCR5 Phospholipid scramblase family, member 5
ILMN_1698894 OR5AS1 Olfactory receptor, family 5, subfamily AS, member 1
ILMN_1705828 RICTOR RPTOR independent companion of MTOR, complex 2
ILMN_1683046 OR6Y1 Olfactory receptor, family 6, subfamily Y, member 1
ILMN_2114812 ONECUT1 One cut homeobox 1
ILMN_1770248 PDLIM2 PDZ and LIM domain 2 (mystique)
ILMN_1784272 CD1E CD1e molecule
ILMN_1755635 FLJ33534 Hypothetical protein FLJ33534 (FLJ33534), mRNA
ILMN_1799067 TRY1 Protease, serine, 1 (trypsin 1)
ILMN_1693448 LOC643811 Similar to FERM domain containing 6
ILMN_1723323 HCG4 HLA complex group 4 (non-protein coding)
ILMN_1865604 Hs.253267 60270330F1 NCI_CGAP_Skn3 Homo sapienscDNA clone IMAGE:4800534 5, mRNA sequence
ILMN_3308698 MIR1276 MicroRNA 1276
ILMN_1714014 LOC644491 NMDA receptor regulated 2 pseudogene
ILMN_2114185 C1orf104 RUSC1 antisense RNA 1 (non-protein coding)
ILMN_1911044 Hs.540915 nf66b06.s1 NCI_CGAP_Co3 Homo sapienscDNA clone IMAGE:924851 3, mRNA sequence
ILMN_1748543 STRC Stereocilin
ILMN_1675221 DGKZ Diacylglycerol kinase, zeta
ILMN_1726263 LOC653748 Similar to dipeptidylaminopeptidase-like protein 6 (dipeptidylpeptidase VI) (dipeptidylpeptidase 6) (dipeptidyl peptidase VI-like protein) (dipeptidylaminopeptidase-related protein) (DPPX)
ILMN_1817113 Hs.547985 UI-H-BI0p-abm-h-10-0-UI.s1 NCI_CGAP_Sub2 Homo sapienscDNA clone IMAGE:2712450 3, mRNA sequence
ILMN_1793525 KIR2DS3 Killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 3
ILMN_2415617 C10orf72 V-set and transmembrane domain containing 4
ILMN_1746277 MLLT4 Myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4
ILMN_1678246 LOC644001 Hypothetical protein LOC644001
ILMN_3257856 LOC100130938 Hypothetical LOC100130938 (LOC100130938), mRNA
ILMN_1865630 Hs.116333 Soares_testis_NHTHomo sapienscDNA clone IMAGp998A031828, mRNA sequence
ILMN_2152028 LOC642452 Hypothetical LOC642452 (LOC642452), mRNA
ILMN_3244579 LOC649330 Heterogeneous nuclear ribonucleoprotein C-like
ILMN_1905832 Hs.564127 UI-E-DW1-ahc-g-05-0-UI.r1 UI-E-DW1 Homo sapienscDNA clone UI-E-DW1-ahc-g-05-0-UI.5, mRNA sequence
ILMN_1897251 Hs.547715 UI-E-EJ0-ahv-e-11-0-UI.s1 UI-E-EJ0 Homo sapienscDNA clone UI-E-EJ0-ahv-e-11-0-UI 3, mRNA sequence
ILMN_1782800 LOC651410 Hypothetical protein LOC651410
ILMN_1732554 ZNF346 Zinc finger protein 346
ILMN_1674014 LOC653878 Similar to Cytosolic acyl coenzyme A thioester hydrolase, inducible (Long chain acyl-CoA thioester hydrolase) (Long chain acyl-CoA hydrolase) (CTE-I) (CTE-Ib)
ILMN_1911501 Hs.543905 xi89f08.x1 NCI_CGAP_Mel3 Homo sapienscDNA clone IMAGE:265999 3, mRNA sequence
ILMN_1878305 Hs.262789 xk07d09.x1 NCI_CGAP_Co20 Homo sapienscDNA clone IMAGE:2666033 3, mRNA sequence
ILMN_1858245 Hs.156566 Soares_testis_NHTHomo sapienscDNA clone IMAGp998M073519, mRNA sequence
ILMN_1704313 GSTCD Glutathione S-transferase, C-terminal domain containing
ILMN_1707398 ESRRB Estrogen-related receptor beta
ILMN_3307954 L3MBTL4 l(3)mbt-like 4 (Drosophila)
ILMN_1851244 Hs.59368 UI_H_BI1_aex-h-12-0-UI.s1 NCI_CGAP_Sub3 Homo sapienscDNA clone IMAGE:2720903 3, mRNA
ILMN_1828556 Hs.541581 nac23e12.x1 Lupski_sciatic_nerveHomo sapienscDNA clone IMAGE:3394270 3, mRNA sequence
ILMN_1692894 LOC654042 Similar to dehydrogenase/reductase (SDR family) member 4 like 2
ILMN_1893728 Hs.377660 Homo sapienscDNA FLJ26242 fis, clone DMC00770
ILMN_1667005 LOC652676 Similar to similar to hypothetical protein FLJ36144
ILMN_3241607 LOC100132106 Hypothetical LOC100132106
ILMN_1797503 GOLGA8G Golgin A8 family, member G
ILMN_1828034 Hs.154513 ik89c11.z1 Human insulinomaHomo sapienscDNA clone IMAGE:6027645 3, mRNA sequence
ILMN_1886816 Hs.544491 qq31a07.x1 Soraes_NhHMPu_S1 Homo sapienscDNA clone IMAGE:1934100 3, mRNA sequence
ILMN_1847950 Hs.505398 wq87c02.x1 NCI_CGAP_GC6 Homo sapienscDNA clone IMAGE:2479010 3, mRNA sequence
ILMN_1734479 ACCN3 Acid-sensing (proton-gated) ion channel 3
ILMN_1675025 H2BFM H2B histone family, member M
ILMN_2073279 SIM1 Single-minded homolog 1 (Drosophila)
ILMN_1910185 Hs.98563 zw57h03.s1 Soares_total_fetus_Nb2HF8_9w Homo sapienscDNA clone IMAGE:774197 3, mRNA sequence
ILMN_3251491 UQCRB Ubiquinol-cytochrome c reductase binding protein
ILMN_2180315 ATG4D ATG4 autophagy related 4 homolog D (S. cerevisiae)
ILMN_1885583 Hs.542934 Homo sapienscDNA FLJ26431 fis, clone KDN01390
ILMN_1743301 MSR1 Macrophage scavenger receptor 1
ILMN_1809820 LOC648963 Similar to retinitis pigmentosa 1-like 1
ILMN_1869348 Hs.460114 UI-E-EJ0-ahv-d-07-0-UI.s1 UI-E-EJ0 Homo sapienscDNA clone UI-E-EJ0-ahv-d-07-0-UI 3, mRNA sequence
ILMN_1711332 TFEC Transcription factor EC
ILMN_2228538 IRAK1BP1 Interleukin-1 receptor-associated kinase 1 binding protein 1
ILMN_1756455 IL5RA Interleukin 5 receptor, alpha
ILMN_1719202 ZNF174 Zinc finger protein 174
ILMN_1847029 Hs.553290 HESC3_84_D06.g1_A036 Human embryonic stem cells Homo sapienscDNA clone IMAGE:7483454 5, mRNA sequence
ILMN_1740217 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1
ILMN_1787464 LOC651296 Similar to RAB, member of RAS oncogene family-like 2B isoform 1
ILMN_1734096 DCLRE1A DNA cross-link repair 1A
ILMN_2391333 CYP20A1 Cytochrome P450, family 20, subfamily A, polypeptide 1
ILMN_2226314 DBR1 Debranching enzyme homolog 1 (S. cerevisiae)
ILMN_2379560 CDC14B CDC14 cell division cycle 14 homolog B (S. cerevisiae)
ILMN_2078466 DZIP1L DAZ interacting protein 1-like
ILMN_1653039 LOC642934 Hypothetical protein LOC642934 (LOC642934), mRNA
ILMN_2044293 KBTBD7 Kelch repeat and BTB (POZ) domain containing 7
ILMN_1809951 ZNF200 Zinc finger protein 200
ILMN_1760280 NXT1 NTF2-like export factor 1
ILMN_1657796 STMN1 Stathmin 1
ILMN_1793578 ZFP37 Zinc finger protein 37 homolog (mouse)

Shin et al.

Shin et al. BMC Cancer 2012 12:521   doi:10.1186/1471-2407-12-521

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