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Resolution: standard / high Figure 1.
Methodology for identifying global transcription factor-interactome and important
transcription factors in CRC. Depicts the overall methodology used to prioritize the TFs: (1) Data collection from
peer reviews; (2) Discovery of associations using BioMAP (literature augmented data);
(3) Validation of BioMAP associations using Gene Ontology distance and protein-protein
interactions; (4) Construction of the global TF interaction network; (5) Ranking of
TFs using multi-level, multi-parametric using: (i) weighted/un-weighted prioritization
schema, (ii) hypergeometric associations, and (iii) Modules; and (6) Validation of
TFs by pathway analysis.
Pradhan et al. BMC Cancer 2012 12:331 doi:10.1186/1471-2407-12-331 |