Table 2

Categories of altered genes in CNE-2 single clone cells by macrophages-like cells during conditioned culture

Accession No.

Gene description

Alteration


NM_001012

Ribosomes This gene encodes a ribosomal protein that is a component of the 40S subunit.

Up

NM_002140.2

heterogeneous nuclear ribonucleoproteins (hnRNPs)

Up

NM_005174.2

Homo sapiens ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 (ATP5C1), nuclear gene encoding mitochondrial protein, transcript variant 2, mRNA

Up

NM_015937.3

Homo sapiens phosphatidylinositol glycan anchor biosynthesis, class T (PIGT), mRNA

Up

NM_018085.4

Homo sapiens importin 9 (IPO9)

Up

NM_000314.4

Homo sapiens phosphatase and tensin homolog (PTEN)

Up

NM_001033756.1

Homo sapiens vascular endothelial growth factor A (VEGFA), transcript variant 7, mRNA

Up

NM_003064.2

Homo sapiens secretory leukocyte peptidase inhibitor (SLPI)

Up

NM_002394.4

Homo sapiens solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2 (SLC3A2), transcript variant 3

Up

NM_005496.3

Homo sapiens structural maintenance of chromosomes 4 (SMC4), transcript variant 1

Up

NM_006145.1

Homo sapiens DnaJ (Hsp40) homolog, subfamily B, member 1 (DNAJB1)

Up

NM_002306.2

Homo sapiens lectin, galactoside-binding, soluble, 3 (LGALS3), transcript variant 1

Up

NM_020186.1

Homo sapiens ACN9 homolog (S. cerevisiae) (ACN9)

Up

NM_005347.2

Homo sapiens heat shock 70 kDa protein 5 (glucose-regulated protein,78 kDa) (HSPA5)

Up

NM_016639.1

Homo sapiens tumor necrosis factor receptor superfamily, member 12A (TNFRSF12A)

Up

NM_005348.3

Homo sapiens heat shock protein 90 kDa alpha (cytosolic), class A member 1 (HSP90AA1), transcript variant 2

Up

NM_194247.2

Homo sapiens heterogeneous nuclear ribonucleoprotein A3 (HNRNPA3)

Up

NM_004148.3

Homo sapiens ninjurin 1 (NINJ1)

Up

NM_002337.1

Homo sapiens low density lipoprotein receptor-related protein associated protein 1 (LRPAP1)

Up

NM_001003703.1

Homo sapiens ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F6 (ATP5J), nuclear gene encoding mitochondrial protein, transcript variant 1

Up

NM_004048.2

Homo sapiens beta-2-microglobulin (B2M)

Up

NM_000146.3

Homo sapiens ferritin, light polypeptide (FTL)

Up

NM_001105079.1

Homo sapiens fibrosin (FBRS), mRNA

Up

NM_001002.3

Homo sapiens ribosomal protein, large, P0 (RPLP0) transcript variant 1

Up

NM_015134.2

Homo sapiens myosin phosphatase Rho interacting protein (MPRIP), transcript variant 1

Up

NM_004888.3

Homo sapiens ATPase, H+ transporting, lysosomal 13 kDa, V1 subunit G1 (ATP6V1G1)

Up

NM_015161.1

Homo sapiens ADP-ribosylation factor-like 6 interacting protein 1 (ARL6IP1)

Up

NM_001001973.1

Homo sapiens ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 (ATP5C1), nuclear gene encoding mitochondrial protein, transcript variant 1

Up

NM_001997.3

Homo sapiens Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (FAU)

Up

NM_006196.2

Homo sapiens poly(rC) binding protein 1 (PCBP1)

Up

NM_000925.2

Homo sapiens pyruvate dehydrogenase (lipoamide) beta (PDHB)

Up

NR_003286.1

Homo sapiens 18S ribosomal RNA (LOC100008588)

Up

BAG64005.1

unnamed protein product

Up

NW_001838014.1

Homo sapiens chromosome 10 genomic contig, alternate assembly

Up

NT_007592.14

Homo sapiens chromosome 6 genomic contig, reference assembly

Up

NW_001839064.2

Homo sapiens chromosome 7 genomic contig, alternate assembly

Up


Cao et al. BMC Cancer 2010 10:68   doi:10.1186/1471-2407-10-68

Open Data