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Single SNP Analysis |
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| SNP |
Gene* |
Location* |
2 × 2 McNemar's test p-value |
3 × 3 McNemar's test p-value |
Likelihood Ratio Test p-value |
Odds Ratio (95% C.I.) of most likely mode of inheritance |
Likelihood Ratio Test Model |
|
|
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| rs800292 |
CFH |
1q32 |
0.0005 |
1.6766E-05 |
0.0020 |
0.295(0.126–0.693) |
Additive |
| rs572515 |
CFH |
1q32 |
1.1422E-06 |
2.1771E-09 |
7.0012E-07 |
4.619(2.288–9.326) |
Additive |
| rs7529589 |
CFH |
1q32 |
0.0003 |
1.6852E-05 |
1.2034E-05 |
8.403(2.670–26.442) |
Recessive |
| rs1061170 |
CFH |
1q32 |
0.0002 |
3.9821E-05 |
1.9045E-05 |
7.382(2.495–21.838) |
Recessive |
| rs12038333 |
CFH |
1q32 |
0.0001 |
1.7989E-06 |
8.3182E-06 |
3.151(1.707–5.819) |
Recessive |
| rs203674 |
CFH |
1q32 |
5.7447E-06 |
5.0608E-08 |
4.3995E-06 |
3.914(2.020–7.585) |
Additive |
| rs10801575 |
~CFH |
~1q32 |
0.0304 |
0.0315 |
0.0108 |
0.370(0.174–0.785) |
Dominant |
| rs1853883 |
CFHR4 |
1q32 |
0.0001 |
6.9750E-06 |
0.0003 |
2.687(1.519–4.751) |
Additive |
| rs3790414 |
CFHR2 |
1q31-q32.1 |
0.0018 |
0.0002 |
0.0137 |
0.424(0.206–0.876) |
Additive |
| rs1759016 |
CFHR5 |
1q22-q23 |
0.0092 |
0.0037 |
0.0092 |
0.465(0.262–0.827) |
Additive |
| rs10922152 |
CFHR5 |
1q22-q23 |
0.0007 |
0.0001 |
0.0014 |
0.434(0.258–0.730) |
Additive |
| rs10922153 |
CFHR5 |
1q22-q23 |
0.0002 |
1.0290E-05 |
0.0004 |
0.389(0.224–0.677) |
Additive |
| rs6663083 |
? |
1q31-1q32 |
0.0003 |
1.6704E-05 |
0.0008 |
0.419(0.248–0.707) |
Additive |
| rs2990510 |
F13B |
1q31-q32.1 |
0.0438 |
0.0395 |
0.1003 |
2.462(0.801–7.571) |
Recessive |
| rs6003 |
F13B |
1q31-q32.1 |
0.0153 |
0.0022 |
0.0025 |
0.162(0.041–0.631) |
Additive |
| rs1412632 |
? |
1q31-1q32 |
0.0153 |
0.0022 |
0.0030 |
0.165(0.042–0.645) |
Additive |
| rs1412631 |
? |
1q31-1q32 |
0.0098 |
0.0005 |
0.0013 |
0.110(0.022–0.557) |
Additive |
| rs12677 |
ASPM |
1q31 |
0.0098 |
0.0005 |
0.0019 |
0.127(0.026–0.609) |
Additive |
| rs4915337 |
ASPM |
1q31 |
0.0614 |
0.0233 |
0.0067 |
0.182(0.045–0.740) |
Additive |
| rs1888991 |
ASPM |
1q31 |
0.0244 |
0.0051 |
0.0044 |
0.175(0.044–0.696) |
Additive |
| rs6677082 |
ASPM |
1q31 |
0.0244 |
0.0051 |
0.0048 |
0.175(0.044–0.695) |
Additive |
| rs6656448 |
ZBTB41 |
1q31.3 |
0.0218 |
0.0054 |
0.0042 |
0.209(0.063–0.694) |
Additive |
| rs9288410 |
MAP2 |
2q34-q35 |
0.5563 |
0.3721 |
0.0294 |
1.923(0.885–4.179) |
Recessive |
| rs304039 |
ITPR1 |
3p26-p25 |
0.6774 |
0.7070 |
0.1035 |
1.943(0.858–4.396) |
Recessive |
| rs304041 |
ITPR1 |
3p26-p25 |
0.5896 |
0.4206 |
0.1035 |
1.943(0.858–4.396) |
Recessive |
| rs1038639 |
ITPR1 |
3p26-p25 |
1.0000 |
0.9062 |
0.4345 |
0.731(0.332–1.610) |
Dominant |
| rs1447338 |
? |
4q34-4q35 |
0.5419 |
0.4856 |
0.2949 |
1.350(0.730–2.497) |
Additive |
| rs7090030 |
ADD3 |
10q24.2-q24.3 |
1.0000 |
1.0000 |
0.5834 |
0.485(0.035–6.710) |
Additive |
| rs11194995 |
ADD3 |
10q24.2-q24.3 |
1.0000 |
1.0000 |
0.5834 |
0.485(0.035–6.710) |
Additive |
| rs11194996 |
ADD3 |
10q24.2-q24.3 |
1.0000 |
1.0000 |
0.9217 |
0.881(0.071–10.862) |
Additive |
| rs11195001 |
ADD3 |
10q24.2-q24.3 |
1.0000 |
1.0000 |
1.0000 |
0.485(0.035–6.715) |
Additive |
| rs2014307 |
PLEKHA1/HTRA1 |
10q26 |
6.6872E-06 |
8.1056E-07 |
3.7092E-05 |
0.240(0.111–0.520) |
Additive |
| rs949252 |
GPR152 |
11q13.1 |
0.4795 |
0.4795 |
0.1979 |
2.006(0.115–35.135) |
Dominant |
| rs7124630 |
TMEM134 |
11q13.1 |
0.4795 |
0.0000 |
0.3864 |
1.004E-07(0.000-Inf) |
Additive |
| rs11575221 |
STAT2 |
12q13-12q14 |
1.0000 |
1.0000 |
0.4358 |
2.740(0.204–36.835) |
Additive |
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Abbreviations: SNP, single nucleotide polymorphism; C.I., confidence interval. * Gene and location of each SNP determined using ENSEMBL [15]. | |||||||
Zhang et al. BMC Medical Genetics 2008 9:51 doi:10.1186/1471-2350-9-51 |
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