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GO pathways over-represented in the relapse and remission upregulated gene sets. |
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| Disease Phase/Expression |
Gene Ontology |
p-value |
Genes |
|
|
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| RELAPSE Upregulated |
GO:0009607 – Response to biotic stimulus |
0.0462 |
GPR65, NMI, TAP2, IFI16, CSF2RB, TCRIM, ICOS, FCGR2B, CD48, BST1, TNFSF10, TLR5, MCP, DNAJB6, MNDA, GBP2, OXSR1, AQP9, TNFAIP6, NFIL3, CD53, GEM, LY96, DOCK2, IL1B, CLECSF6, PARP4, PLA2G7, CD97, MX2, 5233, HSPA1B, MAPK14, IL1R2, C3AR1, IFIT2, STAT1, IFNGR1, S100A8, EDEM1, LYZ, FAS, HSPA1L, LTBR, IL1RL1, B2M, HSPA1A |
| GO:0008219 – Cell death |
0.0462 |
PARP4, GADD45B, MCL1, BCL2, GPR65, SMNDC1, RAF1, BIRC2, RAD21, CASP3, CASP10, TXNL1, BCLAF1, API5, STAT1, CUL1, YWHAG, TNFSF10, GADD45G, LYZ, FAS, IL1B, TRAF5, LTBR, TAX1BP1, CASP1, BID |
|
| GO:0006955 – Immune response |
0.0462 |
GPR65, NMI, TAP2, IFI16, CSF2RB, TCRIM, ICOS, FCGR2B, BST1, TNFSF10, TLR5, MCP, MNDA, GBP2, AQP9, NFIL3, TNFAIP6, CD53, GEM, DOCK2, LY96, IL1B, CLECSF6, PARP4, PLA2G7, CD97, MX2, MAPK14, IL1R2, C3AR1, IFIT2, S100A8, FAS, LTBR, IL1RL1, B2M |
|
| GO:0016265 – Death |
0.0462 |
PARP4, GADD45B, MCL1, BCL2, GPR65, SMNDC1, RAF1, BIRC2, RAD21, CASP3, CASP10, TXNL1, BCLAF1, API5, STAT1, CUL1, YWHAG, TNFSF10, GADD45G, LYZ, FAS, IL1B, TRAF5, LTBR, TAX1BP1, CASP1, BID |
|
| GO:0006952 – Defense response |
0.0462 |
GPR65, NMI, TAP2, IFI16, CSF2RB, TCRIM, ICOS, FCGR2B, CD48, BST1, TNFSF10, TLR5, MCP, MNDA, GBP2, AQP9, NFIL3, TNFAIP6, CD53, GEM, DOCK2, LY96, IL1B, CLECSF6, PARP4, PLA2G7, CD97, MX2, MAPK14, IL1R2, C3AR1, IFIT2, S100A8, LYZ, FAS, LTBR, IL1RL1, B2M |
|
| GO:0004722 – Protein serine/threonine phosphatase activity |
0.0462 |
MTMR6, PPM1A, PPM1B, DUSP6, PPP2R2A, MTMR1 |
|
| GO:0006915 – Apoptosis |
0.0462 |
GADD45B, MCL1, BCL2, GPR65, SMNDC1, RAF1, BIRC2, RAD21, CASP3, CASP10, TXNL1, BCLAF1, API5, STAT1, YWHAG, CUL1, TNFSF10, GADD45G, FAS, IL1B, TRAF5, LTBR, TAX1BP1, CASP1, BID |
|
| GO:0012501 – Programmed cell death |
0.0462 |
GADD45B, MCL1, BCL2, GPR65, SMNDC1, RAF1, BIRC2, RAD21, CASP3, CASP10, TXNL1, BCLAF1, API5, STAT1, YWHAG, CUL1, TNFSF10, GADD45G, FAS, IL1B, TRAF5, LTBR, TAX1BP1, CASP1, BID |
|
| GO:0005057 – Receptor signaling protein activity |
0.0533 |
STAT1, TGFBR2, RAF1, LYN, ACVR1B, MAPK14, NSMAF, MAPK9, IRS1, TCRIM, IL1RL1, PDLIM5, MAPK8 |
|
| REMISSION Upregulated |
GO:0015031- protein transport |
0.0189 |
STXBP3, RANBP6, RAB2, PTTG1IP, ARF1, STX7, SNX2, GRP58, TLOC1, KPNB1, VDP, SNAG1, CLTC, COPB, TMED7, ARF3, RAB5A, TNPO1, RAB1A, COPA, RAB7, TLK1 |
| GO:0045184 – establishment of protein localization |
0.0189 |
STXBP3, RANBP6, RAB2, PTTG1IP, ARF1, STX7, SNX2, GRP58, TLOC1, KPNB1, VDP, SNAG1, CLTC, COPB, TMED7, ARF3, RAB5A, TNPO1, RAB1A, COPA, RAB7, TLK1 |
|
| GO:0008104 – protein localization |
0.0189 |
STXBP3, RANBP6, RAB2, PTTG1IP, ARF1, STX7, SNX2, GRP58, TLOC1, KPNB1, VDP, SNAG1, CLTC, COPB, TMED7, ARF3, RAB5A, TNPO1, RAB1A, COPA, RAB7, TLK1 |
|
| GO:0005885 – Arp2/3 protein complex |
0.046 |
ARPC2, ACTR3, ARPC3 |
|
| GO:0030833 – regulation of actin filament polymerization |
0.046 |
ARPC5, ARPC2, ARPC3 |
|
Arthur et al. BMC Medical Genetics 2008 9:17 doi:10.1186/1471-2350-9-17 |
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