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Open Access Research article

Detection of subtelomere imbalance using MLPA: validation, development of an analysis protocol, and application in a diagnostic centre

Joo Wook Ahn1*, Caroline Mackie Ogilvie1, Alysia Welch1, Helen Thomas1, Rajiv Madula2, Alison Hills1, Celia Donaghue1 and Kathy Mann1

Author Affiliations

1 Cytogenetics Department, Guy's and St Thomas' NHS Foundation Trust, London, UK

2 Department of Medical and Molecular Genetics, King's College London School of Medicine, Guy's Hospital, London, UK

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BMC Medical Genetics 2007, 8:9  doi:10.1186/1471-2350-8-9

Published: 5 March 2007

Abstract

Background

Commercial MLPA kits (MRC-Holland) are available for detecting imbalance at the subtelomere regions of chromosomes; each kit consists of one probe for each subtelomere.

Methods

For validation of the kits, 208 patients were tested, of which 128 were known to be abnormal, corresponding to 8528 genomic regions overall. Validation samples included those with trisomy 13, 18 and 21, microscopically visible terminal deletions and duplications, sex chromosome abnormalities and submicroscopic abnormalities identified by multiprobe FISH. A robust and sensitive analysis system was developed to allow accurate interpretation of single probe results, which is essential as breakpoints may occur between MLPA probes.

Results

The validation results showed that MLPA is a highly efficient technique for medium-throughput screening for subtelomere imbalance, with 95% confidence intervals for positive and negative predictive accuracies of 0.951-0.996 and 0.9996-1 respectively. A diagnostic testing strategy was established for subtelomere MLPA and any subsequent follow-up tests that may be required. The efficacy of this approach was demonstrated during 15 months of diagnostic testing when 455 patients were tested and 27 (5.9%) abnormal cases were detected.

Conclusion

The development of a robust, medium-throughput analysis system for the interpretation of results from subtelomere assays will be of benefit to other Centres wishing to implement such an MLPA-based service.