Table 1

Obesity SNPs for association with BMI in the Auckland Birthweight Collaborative study samples (Morgan et al.[12])
Gene Name Chr SNP Description Tested allele Tested allele frequency
ADIPOR2 adiponectin receptor 2 12 rs2286385 Intronic T 0.339
BDNF Brain-derived neurotrophic factor 11 rs6265 Missense V66M G 0.828
BDNF Brain-derived neurotrophic factor 11 rs925946 9.2 kb upstream G 0.653
CTNNBL1 catenin (cadherin-associated protein), beta-like 1 20 rs16986921 Intronic T 0.046
CTNNBL1 catenin (cadherin-associated protein), beta-like 1 20 rs6013029 Intronic T 0.045
CTNNBL1 catenin (cadherin-associated protein), beta-like 1 20 rs6020395 Intronic C 0.049
CTNNBL1 catenin (cadherin-associated protein), beta-like 1 20 rs6020712 Intronic A 0.046
CTNNBL1 catenin (cadherin-associated protein), beta-like 1 20 rs6020846 Intronic G 0.054
CTNNBL1 catenin (cadherin-associated protein), beta-like 1 20 rs6096781 Intronic C 0.040
CTNNBL1 catenin (cadherin-associated protein), beta-like 1 20 rs6125962 Intronic C 0.053
FAIM2 Fas apoptotic inhibitory molecule 2 12 rs7138803 Intergenic A 0.373
FTO fat mass and obesity associated gene 16 rs6499640 Intronic A 0.613
FTO fat mass and obesity associated gene 16 rs8050136 Intronic A 0.358
FTO fat mass and obesity associated gene 16 rs9939609 Intronic A 0.346
GNPDA2 glucosamine-6-phosphate deaminase 2 4 rs10938397 453.9 kb downstream G 0.462
HMGA2 high mobility group AT-hook 2 12 rs1042725 UTR-3 C 0.502
INSIG2 insulin-induced gene 2 gene 2 rs2012693 25.8 kb upstream C 0.607
INSIG2 insulin-induced gene 2 gene 2 rs7566605 10 kb upstream G 0.678
KCTD15 potassium channel tetramerization domain containing 15 19 rs11084753 17 kb downstream A 0.347
LPL lipoprotein lipase 8 rs3200218 3′UTR G 0.238
MAF v-maf musculoaponeurotic fibrosarcoma oncogene homolog 16 rs1424233 48 kb downstream A 0.479
MC4R melanocortin-4 receptor 18 rs12970134 153.8 kb upstream A 0.259
MC4R melanocortin-4 receptor 18 rs17700633 109.1 kb upstream A 0.309
MC4R melanocortin-4 receptor 18 rs17782313 187.5 kb upstream C 0.228
MC4R melanocortin-4 receptor 18 rs4450508 125.1 kb upstream A 0.325
MC4R melanocortin-4 receptor 18 rs502933 142 kb upstream A 0.317
MTCH2 mitochondrial carrier homolog 2 11 rs10838738 Intronic G 0.363
MTMR9 myotubularin-related protein 9 8 rs2293855 intronic A 0.393
NPC1 Niemann-Pick disease, type C1 16 rs1805081 Missense H 215R A 0.558
NEGR1 Neuronal growth regulator 1 1 rs2568958 16.7 kb downstream A 0.609
NEGR1 Neuronal growth regulator 1 1 rs2815752 64 kb downstream T 0.608
PFKP platelet type phosphofructokinase 10 rs2388395 317 kb upstream G 0.988
PFKP platelet type phosphofructokinase 10 rs6602024 Intronic A 0.106
PTER phosphotriesterase-related gene 10 rs10508503 179 kb upstream C 0.917
SEC16B SEC16 homolog B 1 rs10913469 Intronic C 0.172
SH2B1 SH2B adaptor protein 1 16 rs7498665 Missense A434T G 0.614
TMEM18 transmembrane protein 18 2 rs6548238 33 kb upstream C 0.833

Han et al.

Han et al. BMC Medical Genetics 2013 14:10   doi:10.1186/1471-2350-14-10

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