Open Access Highly Accessed Open Badges Research article

A partial MECP2 duplication in a mildly affected adult male: a putative role for the 3' untranslated region in the MECP2 duplication phenotype

Neil A Hanchard1, Claudia MB Carvalho1, Patricia Bader2, Aaron Thome1, Lisa Omo-Griffith2, Daniela del Gaudio1, Davut Pehlivan1, Ping Fang1, Christian P Schaaf1, Melissa B Ramocki34, James R Lupski134 and Sau Wai Cheung1*

  • * Corresponding author: Sau Wai Cheung

  • † Equal contributors

Author Affiliations

1 Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA

2 Northeast Indiana Genetic Counseling Center, 11143 Parkview Plaza Drive, Suite 311 Fort Wayne, IN, USA

3 Department of Pediatrics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, USA

4 Texas Children's Hospital, Houston, TX, USA

For all author emails, please log on.

BMC Medical Genetics 2012, 13:71  doi:10.1186/1471-2350-13-71

Published: 10 August 2012



Duplications of the X-linked MECP2 gene are associated with moderate to severe intellectual disability, epilepsy, and neuropsychiatric illness in males, while triplications are associated with a more severe phenotype. Most carrier females show complete skewing of X-inactivation in peripheral blood and an apparent susceptibility to specific personality traits or neuropsychiatric symptoms.


We describe the clinical phenotype of a pedigree segregating a duplication of MECP2 found on clinical array comparative genomic hybridization. The position, size, and extent of the duplication were delineated in peripheral blood samples from affected individuals using multiplex ligation-dependent probe amplification and fluorescence in situ hybridization, as well as targeted high-resolution oligonucleotide microarray analysis and long-range PCR. The molecular consequences of the rearrangement were studied in lymphoblast cell lines using quantitative real-time PCR, reverse transcriptase PCR, and western blot analysis.


We observed a partial MECP2 duplication in an adult male with epilepsy and mild neurocognitive impairment who was able to function independently; this phenotype has not previously been reported among males harboring gains in MECP2 copy number. The same duplication was inherited by this individual’s daughter who was also affected with neurocognitive impairment and epilepsy and carried an additional copy-number variant. The duplicated segment involved all four exons of MECP2, but excluded almost the entire 3' untranslated region (UTR), and the genomic rearrangement resulted in a MECP2-TEX28 fusion gene mRNA transcript. Increased expression of MECP2 and the resulting fusion gene were both confirmed; however, western blot analysis of lysates from lymphoblast cells demonstrated increased MeCP2 protein without evidence of a stable fusion gene protein product.


The observations of a mildly affected adult male with a MECP2 duplication and paternal transmission of this duplication are unique among reported cases with a duplication of MECP2. The clinical and molecular findings imply a minimal critical region for the full neurocognitive expression of the MECP2 duplication syndrome, and suggest a role for the 3′ UTR in mitigating the severity of the disease phenotype.

Rearrangement; CNV; 3′ UTR; X-linked intellectual disability; Epilepsy