Table 3

Known SNPs discovered via direct sequencing

Knowns SNPs

Region

Chr. Position

SNP

MAF in EA (discovery)

MAF in AA (discovery)

MAF in EA (dbSNP)

MAF in AA (dbSNP)


rs13376447

5' UTR

171709896

A/G

0.00

0.06

0.01

0.09


rs10753081

5' UTR

171710154

C/T

0.39

0.30

0.73

0.21


rs34282688

5' UTR

171710819

C/T

0.07

0.00

NA

NA


rs9425722

5' UTR

171711268

C/T

1.02

0.70

0.04

0.24


rs35152701

5' UTR

171711269

A/G

0.02

0.00

0.00

0.00


rs12739142

5' UTR

171711278

A/G

0.04

0.00

0.02

0.04


rs4354572

5' UTR

171711459

C/T

1.02

0.66

0.00

0.04


rs34619706

5' UTR

171711670

A/G

0.09

0.02

0.07

0.04


rs4382766

5' UTR

171711699

C/T

0.54

0.28

0.30

0.50


rs13376392

5' UTR

171711701

C/T

0.00

0.06

0.00

0.04


rs11576174

5' UTR

171712301

G/T

0.04

0.00

0.15

0.00


rs34977864

5' UTR

171712466

G/T

0.00

0.06

0.00

0.10


rs35441546

5' UTR

171712652

C/T

0.00

0.06

0.00

0.03


rs35133735

5' UTR

171712738

C/T

0.00

0.06

0.00

0.00


rs6671141

intron

171713557

G/T

0.26

0.26

0.24

0.30


rs35749242

intron

171714171

A/G

0.00

0.12

0.00

0.03


rs35918328

intron

171714199

A/G

0.00

0.02

0.00

0.10


rs35899698

intron

171714279

C/T

0.00

0.10

0.00

0.00


rs33942654

intron

171714884

A/G

0.26

0.18

0.23

0.33


rs35679908

intron

171715013

A/G

0.00

0.02

0.00

0.00


rs9425723

intron

171715118

A/G

0.33

0.62

0.23

0.63


rs9425724

intron

171715123

A/G

0.33

0.54

0.23

0.53


rs7540065

intron

171715659

A/G

0.33

0.56

0.23

0.53


rs35244306

intron

171716247

C/T

0.00

0.14

0.00

0.07


rs4611

3'UTR

171723640

C/T

0.33

0.50

0.77

0.47


rs3833536

3'UTR

171724172

C/-

0.00

0.00

0.05

0.04


rs7314

3'UTR

171724222

A/G

0.20

0.50

0.23

0.52


rs36005931

3'UTR

171724224

A/G

0.00

0.04

0.00

0.10


rs2000

3'UTR

171724457

A/G

0.04

0.00

0.03

0.00


rs34129563

3'UTR

171724720

G/C

0.11

0.00

0.02

0.03


rs9425727

3'UTR

171725216

G/C

0.02

0.14

0.00

0.04


rs35358649

3'UTR

171725429

C/T

0.02

0.00

0.00

0.00


rs35547740

3'UTR

171725569

(-/T)

0.00

0.04

0.00

0.07


rs6702835

3'UTR

171725723

A/G

0.33

0.48

0.23

0.54


rs60587131

3'UTR

171726777

G/C

0.00

0.02

0.05

NA


rs57032935

3'UTR

171726836

G/C

0.15

0.22

0.18

0.31


rs6664925

3'UTR

171729033

A/G

0.00

0.18

0.00

0.16


Rushefski et al. BMC Medical Genetics 2011 12:77   doi:10.1186/1471-2350-12-77

Open Data