Table 2

Location and minor allele frequency (MAF) information for 24 SNPs selected for replication study in Italian sample

Chr

SNP

SNP positiona

Minor Allele

MAF

Genes in Regionb


1

rs7556447

2,335,959

G

0.24

PEX10


1

rs1355637c

148,849,062

T

0.19

MCL1|ENSA


1

rs10918270

160,182,125

A

0.41

ATF6


2

rs11899121

20,231,454

C

0.50

SDC1


2

rs7577851c

69,577,214

T

0.17

AAK1


2

rs17817190

134,068,118

G

0.11

NAP5


6

rs6936388

42,275,464

T

0.25

CCND3|TAF8|GUCA1A|GUCA1B|MRPS10


6

rs1572662

154,853,289

A

0.36

CNKSR3|CLDN20|RBM16|TIAM2|TFB1M


7

rs1420143c

29,514,849

C

0.44

CHN2


7

rs17663983

76,243,177

T

0.12


10

rs12261736

52,738,610

T

0.28

PRKG1


10

rs7076519

127,738,829

C

0.33

ADAM12


11

rs10767971c

32,852,240

T

0.42

PRRG4|QSER1


12

rs12829697

30,067,223

G

0.13


12

rs10773917

130,572,784

T

0.23


13

rs4771006d

26,180,684

A

0.49

WASF3


13

rs676495c

29,561,754

T

0.24


14

rs10147486

47,054,769

T

0.27

MDGA2


15

rs17565841

25,670,842

A

0.10

OCA2


17

rs9904572

12,803,084

A

0.34

RICH2


17

rs4791571c

14,155,801

A

0.42

HS3ST3B1


18

rs1941184

27,292,121

C

0.30

DSG3


19

rs10420134

40,953,768

G

0.18

C19orf55|SNX26


20

rs3887942

23,925,072

G

0.19

GGTLC1


a From NCBI Build 36 reference; b Nearest genes within 100 kb of SNP;c SNP was genotyped in Mayo-Perlegen LEAPS GWAS;d SNP was genotyped in GenePD-PROGENI GWAS

Latourelle et al. BMC Medical Genetics 2009 10:98   doi:10.1186/1471-2350-10-98

Open Data