|
List of primers employed in the study. |
|
| Primer |
Sequence |
| PC03 |
ACACAACTGTGTTCACTAGC |
| PC04 |
CAACTTCATCCACGTTCACC |
| JA9AE |
CACAGTACAATGCACACATG |
| JA9B |
CACAGTACAATGTACACATG |
| JA12A |
GCAATAGAAAAATTCTCCTC |
| JA12B |
ACAGTAGAAAAATTCCCCTC |
| JA10UB |
CTGTTAAATGGCAGTCTAGC |
| JA10UC |
CTGTTAAATGGTAGTCTAGC |
| JA10UG |
CTGTTAAATGGCAGTTTAGC |
| JA11LAE |
AATTTCTAGATCCCCTCCTG |
| JA11LB |
AATTTCTGGGTCCCCTCCTG |
| JA11LC |
AATTTCTAGGTCCCCTCCTG |
| JA11QA |
CCCCTCCTGAGGAGTTAGCA |
| JA11VB |
CACAATTAAAACTGTGCATTACAA |
| JA11XC |
TTGTTTTATTAGGGAAGTGTTC |
| JA11YE |
AAATTCCCCTCTACAATTAAAATGA |
| Primers used in gag HMA |
|
| HIG777 |
TCACCTAGAACTTTGAATGCATGGG |
| H1P0202 |
CTAATACTGTATCATCTGCTCCTGT |
| H1Gag1584 |
AAAGATGGATAATCCTGGG |
| g17 |
TCCACATTTCCAACAGCCCTTTT |
|
PC03/PC04 primers for β-Globin, JA9AE, JA9B are the upstream primers and JA12A, JA12B are the downstream primer for the first round PCR. JA10UB, JA10UC and JA10UG are the inner upstream primers; JA11LAE, JA11LB and JA11LC are the inner downstream general primers. JA11QA, JA11VB, JA11XC and JA11YE are the inner downstream subtype specific primers for subtypes A, B, C and CRF01-AE, respectively. Primers for gag HMA are relative to HIV-1 group M strain ELI (GenBank accession number K03454) | |
Khan et al. BMC Infectious Diseases 2006 6:164 doi:10.1186/1471-2334-6-164 |
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