Table 2

Panel of organisms used for coverage and specificity analysis
Species Strain Strain detailsa Targetsb
BuMC psu mau cry1
Burkholderia NCTC 10229 Bird, 1961 14,5 - 19,2 -
mallei NCTC 10230 Horse, 1961 14,6 - 19,3 -
NCTC 10245 Horse, 1972 14,1 - 18,8 -
NCTC 10247 Turkey, 1960 15,2 - 19,8 -
NCTC 10248 Clinical isolate, Turkey, 1950 12,2 - 17,4 -
NCTC 10260 Clinical isolate, Turkey, 1949 16,2 - 20,8 -
NCTC 120 1920 14,8 - 19,4 -
NCTC 3708 Mule, India, 1932 14,8 - 19,4 -
NCTC 3709 Horse, India, 1932 15,0 - 19,3 -
NCTC 12938 T Clinical isolate 15,6 - 20,0 -
Burkholderia NCTC 10274 Clinical isolate, Kuala Lumpur, 1962 16,3 18,5 - -
pseudomallei NCTC 10276 Clinical isolate, 1962 16,5 19,0 - -
NCTC 11642 14,7 18,2 - -
NCTC 1688 Rat, Malaysia, 1923 16,9 19,2 - -
NCTC 4845 infected laboratory monkey, Singapore,1935 - 18,8 - -
NCTC 4846 infected laboratory monkey, Singapore,1935 15,9 18,3 - -
NCTC 6700 Clinical isolate, 1942 15,9 18,7 - -
NCTC 7383 1948 16,0 18,7 - -
NCTC 7431 1948 16,0 18,3 - -
NCTC 8016 Sheep, Queensland, 1949 17,0 18,8 - -
NCTC 8707 Jordan, 1946 16,6 18,8 - -
NCTC 8708 Jordan, 1946 17,8 19,9 - -
NCTC 12939 T Clinical isolate, USA, 1953 - 18,4 - -
BD08-00100 Clinical isolate, Netherlands, 2008c 17,0 18,3 - -
BD08-00103 Clinical isolate, Netherlands, 2008 18,8 20,2 - -
BD08-00268 Clinical isolate, Netherlands, 2008 16,2 19,0 - -
BD10-00211 Clinical isolate, Netherlands, 2010 - 18,6 - -
BD12-00016 Clinical isolate, Netherlands, 2012 18,5 21,1 - -
BD12-00217 Clinical isolate, Netherlands, 2012 19,6 22,2 - -
Burkholderia DSM 13276 Environmental sample, Thailand - - - -
thailandensis CIP 106301 Soil, Thailand, 1994 - - - -
CIP 106302 - - - -
Bacillus anthracis NCTC 8234 Weybridge, 1951 (Sterne) - - - -
NCTC 10340 Cow, Edinburgh, 1963 (Vollum) - - - -
Francisella tularensis BD07-537 Clinical isolate, Netherlands, 2007 - - - -
subsp. holarctica (B)
Yersinia pestis Kenya 164 Biovar antiqua, Kenya, <1952 - - - -
Harbin Biovar mediaevalis, China, <1948 - - - -
Madagascar 34-94 Biovar orientalis, Madagascar - - - -
Bacillus atrophaeus ATCC 9372 - - - -
Bacillus cereus ATCC 11778 NCIB Aberdeen, 1962 - - - -
Bacillus coagulans Purchased at Raven Labs, USA - - - -
Bacillus megaterium ATCC 8245 - - - -
Bacillus pumilus ATCC 27142 - - - -
Bacillus subtilis ATCC 6633 - - - -
Bacillus thuringiensis ATCC 29730 var. galleriae Heimpel - - - 20,4
Enterobacter cloacae NCTC 13168 - - - -
Escherichia coli ATCC 25922 Clinical isolate, 1946 - - - -
Pseudomonas ATCC 15442 - - - -
aeruginosa ATCC 27853 Blood culture, 1969 - - - -
Klebsiella pneumoniae BD05-258 Clinical isolate, 2005 - - - -
Salmonella enterica ATCC 14028 Serovar Typhimurium. - - - -
subsp. enterica liver, 1987 - - - -
ATCC 13076 Serovar Enteritidis - - - -
Bos taurus 0469 Netherlands, 2009 - - - -
Chrysops relictus I Tissue, Netherlands, 2009 - - - -
Homo sapiens Volunteer 8 Blood, Netherlands, 2009 - - - -
Volunteer 10 Blood, Netherlands, 2009 - - - -
Equus ferus caballus Tissue, Netherlands, 2010 - - - -
Mus musculus Netherlands, 2009 - - - -
Ovis aries Twello 67 Slaughterhouse, Netherlands, 2009 - - - -
Rattus norvegicus 08604 Netherlands, 2009 - - - -
Rattus rattus 08402 Netherlands, 2009 - - - -
Sus scrofa 566 Slaughterhouse, Netherlands, 2009 - - - -

aThe names of the countries or towns are those used at the time of the strain isolation and have been kept for strain designation.

bNumbers represent Cq values; - means no amplification. cAll clinical isolates from B. pseudomallei designated BD were isolated in the Netherlands from imported cases from Thailand.

Janse et al.

Janse et al. BMC Infectious Diseases 2013 13:86   doi:10.1186/1471-2334-13-86

Open Data