Table 1 |
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|
Summary of 454 sequencing results obtained in this study for the American and Chinese chestnut transcriptomes |
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|
Sample |
System |
# Plates |
# of Reads |
# of bp |
AL of Reads |
# Contigs |
AL of All Contigs |
# Large Contigs |
AL of Large Contigs |
|
|
|||||||||
|
ACCanker |
GS20 |
1 |
129,508 |
13,080,308 |
101 |
7,171 |
168 |
247 |
689 |
|
ACHS1 |
FLX |
3/4 |
126,791 |
29,828,910 |
247 |
11,496 |
276 |
885 |
817 |
|
ACHS2 |
FLX |
3/4 |
162,624 |
38,165,054 |
246 |
9,431 |
271 |
691 |
816 |
|
CCCanker |
GS20 |
1 |
235,635 |
23,799,135 |
101 |
14,308 |
168 |
436 |
773 |
|
CCMHS |
FLX |
3/4 |
228,594 |
56,051,191 |
246 |
21,828 |
344 |
3,074 |
851 |
|
CCNHS |
FLX |
3/4 |
259,859 |
64,271,926 |
247 |
28,784 |
339 |
4,451 |
848 |
|
Total |
both |
5 |
2,184,941 |
428,799,020 |
198 |
93.018 |
261 |
9,784 |
799 |
|
|
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|
#, Number; AL, Average length ACCanker, American chestnut genotype BA69 infected stem (canker) cDNA CCCanker, Chinese chestnut variety 'Nanking' infected stem (canker) cDNA CCMHS, Chinese Chestnut variety 'Mahogany' healthy stem cDNA CCNHS, Chinese Chestnut variety 'Nanking' healthy stem cDNA ACHS1, American Chestnut Wisneiwski genotype healthy stem cDNA ACHS2, American Chestnut Watertown genotype healthy stem cDNA |
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|
Barakat et al. BMC Plant Biology 2009 9:51 doi:10.1186/1471-2229-9-51 |
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