Table 2 |
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|
Identified transcriptional regulators and DNA-binding proteins. |
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|
A |
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|
Clust |
Gene |
Gene Symbol |
Description |
WT E vs ANT E |
WT E vs INO E |
WT F vs INO F |
|
|
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|
(2) |
At5g57390 |
AIL5 |
AP2/EREBP, ANT-like (organ size control, inflorescence) |
-2.17 |
-1.33 |
-1.36 |
|
(3) |
At1g79700 |
--- |
AP2/EREBP, AP2-like |
-2.38 |
-1.37 |
-2.29 |
|
(5) |
At2g46530 |
ARF11 |
auxin-responsive factor |
-2.18 |
-1.19 |
1.05 |
|
(10) |
At2g33860 |
ETT |
auxin-responsive factor (flower development) |
-2.37 |
1.03 |
1.07 |
|
(4) |
At1g26680 |
--- |
B3 REM family |
-2.86 |
-1.15 |
-1.10 |
|
(10) |
At5g18090 |
--- |
B3 REM family |
-2.06 |
-1.11 |
1.16 |
|
(7) |
At3g46770 |
--- |
B3 REM family |
-1.54 |
-1.26 |
-1.44 |
|
(11) |
At3g61970 |
NGA2 |
B3 NGATHA family (lateral organ development, gynoecium) |
-2.24 |
-1.04 |
-1.42 |
|
(7) |
At2g20180 |
PIL5 |
bHLH family (light responsive GA synthesis repressor) |
-3.13 |
-1.42 |
-2.00 |
|
(3) |
At4g37610 |
BT5 |
BTB/POZ and TAZ zinc finger |
-4.91 |
-1.37 |
-2.40 |
|
(0) |
At3g48360 |
BT2 |
BTB/POZ and TAZ zinc finger (telomerase activation) |
-4.78 |
-1.26 |
-2.59 |
|
(8) |
At1g68640 |
PAN |
bZIP family (floral organ nmber) |
-2.16 |
-1.17 |
1.31 |
|
(2) |
At3g55560 |
AGF2 |
DNA-binding At-hook family |
-2.69 |
-1.16 |
-1.54 |
|
(10) |
At4g24150 |
ATGRF8 |
growth-regulating factor family |
-2.70 |
-1.10 |
-1.13 |
|
(9) |
At1g76110 |
--- |
HMG1/2, ARID/BRIGHT DNA-binding domain |
-3.01 |
-1.20 |
-1.14 |
|
(4) |
At1g04880 |
--- |
HMG1/2, ARID/BRIGHT DNA-binding domain |
-2.35 |
1.07 |
1.06 |
|
(7) |
At4g36740 |
ATHB40 |
homeobox-leucine zipper Class I family |
-3.80 |
-1.89 |
-4.73 |
|
(11) |
At1g75430 |
--- |
homeodomain protein |
-2.02 |
1.03 |
1.04 |
|
(10) |
At5g41410 |
BEL1 |
homeodomain protein (ovule development) |
-2.66 |
-1.12 |
-1.11 |
|
(7) |
At5g17300 |
--- |
myb family |
-2.01 |
-1.21 |
-1.91 |
|
(3) |
At4g37260 |
MYB73 |
myb R2R3 family |
-1.86 |
-1.03 |
-1.58 |
|
(0) |
At5g51910 |
--- |
TCP family |
-1.52 |
-1.16 |
-1.42 |
|
(11) |
At2g01500 |
PFS2 |
WUS type homeobox (ovule development) |
-2.17 |
-1.50 |
-1.59 |
|
(8) |
At1g69180 |
CRC |
YABBY family (abaxial cell development) |
-2.19 |
1.02 |
-1.18 |
|
(7) |
At2g36320 |
--- |
zinc finger (AN1-like) family |
-1.51 |
-1.06 |
-1.37 |
|
(7) |
At5g57660 |
--- |
zinc finger (B-box type) family |
-1.76 |
-1.13 |
-1.66 |
|
(3) |
At2g25900 |
--- |
zinc finger (CCCH-type) family |
-2.23 |
-1.07 |
-1.79 |
|
(7) |
At5g61120 |
--- |
zinc finger (PHD type) family |
-2.02 |
-1.23 |
-1.18 |
|
|
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|
B |
||||||
|
|
||||||
|
Early |
At5g61590 |
--- |
AP2/EREBP, ERF subfamily B-3 |
-1.85 |
-1.63 |
-2.48 |
|
Full |
At2g18050 |
HIS1-3 |
histone H1-3 (drought stress inducible) |
-1.89 |
-1.34 |
-4.50 |
|
Full |
At2g18550 |
ATHB21 |
homeobox-leucine zipper Class I |
-2.13 |
-1.41 |
-3.66 |
|
Full |
At5g03790 |
ATHB51/LMI1 |
homeobox-leucine zipper Class I (LFY target, meristem identity) |
1.58 |
-2.23 |
-6.65 |
|
Early |
At3g54340 |
AP3 |
MADS-box protein (floral development) |
-1.82 |
-2.38 |
-6.38 |
|
Full |
At5g01840 |
AtOFP2 |
ovate family, interacts with BLH4 (transcriptional repressor) |
-1.14 |
-1.13 |
-2.34 |
|
Early |
At2g40750 |
WRKY54 |
WRKY family transcription factor (defense response) |
-1.59 |
-2.10 |
-1.58 |
|
Early |
At5g06070 |
RBE |
zinc finger (SUP-like C2H2 type) family |
-2.30 |
-2.01 |
-1.98 |
|
|
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|
C |
||||||
|
|
||||||
|
At5g18000 |
REM18 |
B3 family, reproductive meristem (regulated by STK/SHP1/2) |
-3.37 |
-1.51 |
-1.44 |
|
|
At5g42630 |
ATS/KAN4 |
GARP family transcription factor (integument development) |
-7.13 |
-2.00 |
-1.31 |
|
|
At3g56400 |
WRKY70 |
WRKY transcription factor (plant senescence, defense) |
-2.66 |
-1.74 |
-2.05 |
|
|
At1g23420 |
INO |
YABBY transcription factor (integument development) |
-10.33 |
-4.04 |
-9.14 |
|
|
At1g68190 |
--- |
zinc finger (B-box type) transcription factor |
-2.28 |
-1.67 |
-2.03 |
|
|
At3g23130 |
SUP |
zinc finger (C2H2 type) (floral development) |
-2.03 |
-1.40 |
-1.55 |
|
|
|
||||||
|
Transcription regulators and DNA binding proteins predicted to be expressed in the inner integument, ovule primordia and medial regions (A), the outer integument (B) and both integuments (C). The listed genes show strong evidence of expression in the integuments (2-fold decreased in one mutant or significantly decreased in both mutants). Fold changes between pair-wise comparisons are given (negative values indicates a lower value in the mutant). SOM cluster assignment or evidence stemming from the EARLY or FULL arrays are noted. |
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|
Skinner and Gasser BMC Plant Biology 2009 9:29 doi:10.1186/1471-2229-9-29 |
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