Research article
Genome scale transcriptome analysis of shoot organogenesis in Populus
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* Corresponding author: Steven H Strauss steve.strauss@oregonstate.edu
1 Department of Forest Ecosystems and Society, Oregon State University, Corvallis, Oregon 97331-5752, USA
2 Department of Botany and Plant Pathology, Cordley Hall 2082, Oregon State University, Corvallis, Oregon 97331-2902, USA
3 Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon 97331-7303, USA
BMC Plant Biology 2009, 9:132 doi:10.1186/1471-2229-9-132
Published: 17 November 2009Additional files
Additional file 1:
Detail on quality assessment of microarray hybridization.
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Additional file 2:
Regulated genes at each stage identified by LIMMA. 2a. CIM3-CIM0 down. 2b. CIM3-CIM0 up. 2c. SIM0-CIM0 down. 2d. SIM0-CIM0 up. 2e. SIM3-CIM0 down. 2f. SIM3-CIM0 up. 2g. SIM8-CIM0 down. 2h. SIM8-CIM0 up
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Additional file 3:
Counts and percentages of regulated genes by GO category.
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Additional file 4:
Regulated transcription factors at each stage. 4a. CIM3-CIM0 down. 4b. CIM3-CIM0 up. 4c. SIM0-CIM0 down. 4d. SIM0-CIM0 up. 4e. SIM3-CIM0 down. 4f. SIM3-CIM0 up. 4g. SIM8-CIM0 down. 4h. SIM8-CIM0 up
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Additional file 5:
Regulation of auxin signaling.
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Additional file 6:
Regulation of cytokinin signaling.
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Additional file 7:
Differentially expressed cell cycle genes.
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Additional file 8:
Up-regulated genes at early callus induction common to Arabidopsis and poplar.
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Additional file 9:
Down-regulated genes at early callus induction common to Arabidopsis and poplar.
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Additional file 10:
Up-regulated genes during shoot induction common to Arabidopsis, poplar, and rice.
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Additional file 11:
Down-regulated genes during shoot induction common to Arabidopsis, poplar and rice.
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