Table 2 |
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|
Summary of the publicly available A. thaliana T-DNA insertion events. |
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|
T-DNA population |
Ecotypea |
FST-capture method |
No. of FST'sb |
FSTs in genes including promoters |
FSTs in transcribed regions |
FSTs in exons |
|
|
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|
SK |
Col |
TAIL-PCR |
16,428 |
11,219 c (8,324)d |
7,813 (5,792) |
3,758 (2,981) |
|
|
||||||
|
SALK |
Col |
Genome walking |
145,589 |
93,945 (24,589) |
70,348 (20,598) |
37,513 (15,139) |
|
|
||||||
|
SAIL |
Col |
TAIL-PCR |
57,242 |
42,788 (17, 230) |
35,158 (13,740) |
20,116 (9,006) |
|
|
||||||
|
GABI |
Col |
Genome walking |
63,887 |
41,624 (19,989) |
31,251 (15,915) |
16,684 (10,618) |
|
|
||||||
|
FLAG |
Ws |
Genome walking |
31,744 |
17,863 (10,798) |
11,800 (7,418) |
5,155 (3,755) |
|
|
||||||
|
Total FSTs |
314,886 |
207,439 (29,321) |
156,370 (27,324) |
83,226 (23,556)e |
||
|
|
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|
a. A. thaliana ecotypes: Col – Colombia; and Ws – Wassilewskija. b. Number of FSTs assigned to a unique position within the A. thaliana genome. c. Number of recorded FSTs. d. Number of unique genes interrupted by an FST. e. Total number of unique genes with an insertion. |
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|
Robinson et al. BMC Plant Biology 2009 9:101 doi:10.1186/1471-2229-9-101 |
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