Table 4

Representative transcripts that are detected to be significantly up-regulated in the pea shoot apical meristem (SAM) in comparison to the non-meristem (NM) tissues.

Probea

Fold Change

Annotationb


Cell division and proliferation

EX570197

2.7

High mobility group protein (HMGI/Y)

EX571067

1.6

SAR-DNA binding protein 2

EX571065

1.7

SAR-DNA binding protein 1

EX570428

1.8

Mini-chromosome maintenance protein 6

EX569064

2.0

Small nuclear ribonucleoprotein associated protein B

EX568701

2.0

Histone H1

EX568991

2.1

Delta DNA polymerase

EX570486

2.1

Helicase

EX570226

2.2

Phosphoesterase

EX571345

3.3

Germinal histone H4

EX569084

3.7

Histone H2a.1

EX570634

4.2

Histone H3

EX570270

4.8

Proliferating cell nuclear antigen 2

EX568755

5.9

Histone H4

AB008188

1.9

Cyclin D3.1 protein

EX570164

1.8

Mitotic cyclin B1-1

EX570388

1.5

Cell cycle protein kinase

Protein synthesis and turnover

EX569344

1.4

Transducin family of protein (SLOW WALKER 1)

EX570594

1.9

60S ribosomal protein L18a

EX569298

1.9

Ribosomal protein L30

EX569956

2.0

40S ribosomal protein S18

EX568807

2.1

Fibrillarin

EX570044

2.1

60S ribosomal protein L44

EX570565

2.1

Ribosomal protein L23

EX568742

2.2

Ribosomal protein L24

EX570468

2.2

60S ribosomal protein

EX568861

2.4

40S ribosomal protein S17

EX569048

2.6

Ribosomal protein S2

EX568908

2.9

Ribosomal protein S15-like

EX568954

3.0

Ribosomal protein S3

AB021873

3.2

Ribosome sedimenting protein

EX570400

5.0

Ribosomal protein S4

EX569708

2.3

Ubiquitin extension protein 2

EX568912

1.8

F-box protein (STAMINA PISTILLOIDA)

EX570030

1.9

Chaperonin

EX568849

1.6

Elongation factor 1-beta/EF-1-beta

EX570437

1.4

Cyclophilin

EX568710

1.4

Eukaryotic initiation factor

EX570401

1.4

Translation initiation protein

Transcription factors or hormonal regulation

EX569978

1.5

Putative Hap5 transcription factor

EX570025

1.5

YABBY family transcription factor

EX570238

1.5

Auxin response factor 9

EX570380

3.4

Putative transcriptional co-activator (KIWI)

EX571172

1.6

Transcription factor

EX570262

2.1

Argonaute protein

EX570187

2.9

Indole-3-acetic acid amido synthetase (DWARF IN LIGHT 1)

AF325121

1.6

Brassinosteroid biosynthetic protein

Epigenetic regulation-related

EX568764

1.4

Chromomethylase

AF034419

1.4

DNA methyltransferase

EX569897

1.6

H3 lysine-9 specific SUVH4

EX570366

1.9

SWI/SNF-like ATPase subunits, DDM1

EX570306

2.0

WD-40 repeat protein (MSI3)

DQ026703

1.5

WD-40 repeat protein (MSI1)

Other developmental regulation-related

EX569130

2.0

Mandelonitrile lyase family of FAD containing oxidoreductases (HOTHEAD)

AY343326

1.5

Late-flowering gene

Unclassified/Unknown/No BLASTX match

EX571192

9.0

No BLASTX match

EX569831

3.3

Proline-rich protein

EX570071

3.7

Hypothetical protein

EX571142

3.6

Pathogenesis-related group 5 protein

EX571013

2.8

No BLASTX match

EX570256

2.4

Unnamed protein product

EX569233

2.1

Serine/threonine dehydratase

EX569274

4.5

Lipid transfer protein

EX570925

3.1

Kunitz inhibitor ST1-like

AB032830

3.3

Endo-1,4-beta-glucanase

EX570531

10.7

Vegetative lectin

EX569068

2.4

Expressed protein

EX569663

2.1

Expressed protein

EX570209

2.2

Hypothetical protein

EX570712

2.0

Hypothetical protein

EX570576

1.9

Cytochrome P450 monoxygenase(CYP78A8)

EX569596

1.8

No BLASTX match

EX570325

1.5

MERISTEMATIC RECEPTOR-LIKE KINASE 2

EX570536

2.4

Unknown protein

EX570361

1.5

No BLASTX match

EX570202

1.4

No BLASTX match

EX570695

1.4

No BLASTX match

EX569023

1.6

No BLASTX match

EX570276

1.5

No BLASTX match

EX569420

1.4

No BLASTX match

EX568900

1.6

No BLASTX match


a, Probe with GenBank accession number that begins with EX is derived from this study.

b. Annotation is based on the expect value of BLASTX hit that is set at 1e-5

Wong et al. BMC Plant Biology 2008 8:73   doi:10.1186/1471-2229-8-73

Open Data