Table 1

Tabular comparison of prokaryotic and eukaryotic homologous of Orf222

Organism

PBP

Homologous of Orf222

Length (aa)

CpeT homolog

Slr1649 homolog

Genomic context of the encoded genes


Synechocystis

S. sp. PCC 6803

PC

Slr1649

196

slr1648/ssr2754/slr1649


Crocosphaera watsonii

WH 8501

PE

CwatDRAFT_4238

196

x

cwatDRAFT_4238/cwatDRAFT_4297

PC

CwatDRAFT_0664

215

x

cpeA/cpeT/cpeY

CwatDRAFT_5720

149

x

cpeS/cpeT/cpeR


Nostoc

Nostoc punctiformes PCC 73102

PEC

Npun02004130

197

x

thrC/npun02004130/npun02004132

PC

Npun02004123

209

x

cpeS/cpeT/cpeR

Npun02007740

201

x

-

Anabaena sp. PCC7120

All5339

199

x

-

Alr0647

198

x

-

Anabaena variabilis ATCC 29413

Ava_2579

199

x

-

Ava_4579

198

x

-


Thermosynecho-coccus elongatus

BP-1

PC

Tlr2156

196

x

tlr2154/hemD/tlr2156


Synechococcus

S. elongates PCC 6301

PC

Syc0738_d

197

x

syc0738_d/syc0739_d/ruvC

PE

Syc0764_d

197

x

-

S.sp. PCC 7002

CpcT

199

from [10]

S.sp. CC 9311

Sync_0487

196

x

sync_0484/cpcF/cpcE/sync_0487/cpcA/cpcB/pebB

Sync_0509

208

x

cpeC/sync_0512/cpeD-1/cpeS/sync_0509

S. elongates PCC 7942

Synpcc7942_0772

197

x

-

Synpcc7942_0800

197

x

synpcc7942_0800/synpcc7942_0799/ruvC

S. sp. CC 9605

Syncc9605_0440

204

x

cpeS/cpeT/cpeR

Syncc9605_0419

208

x

cpcB/cpcA/syncc9605_0419/phycocyanobilin- lyase

S. sp. WH 8102

SYNW2024

197

x

rpcB/rpcA/synw2024/phycocyanobilin-lyase

SYNW2003

204

x

cpeC/mpeD/cpeE/cpeS/cpeT/cpeR

S. sp. CC9902

Syncc9902_1910

200

x

cpcB/cpcA/9902_1910/phycocyanobilin-lyase

Syncc9902_1887

204

x

cpeS/cpeT/cpeR


Trichodesmium erythraeum

IMS101

PC

Tery_0543

195

x

cyp/cyp/tery0543/transposase

PE

Tery_0979

209

x

cpeZ/cpeT/cpeF


Calothrix

PCC 7601

PC

CpeT

207

x

cpeS/cpeT/cpeR

PE


Gloeobacter Violaceus

PCC 7421

PE

Glr1182

202

apcD/glr1182/cpcB/cpcA

PC

Glr1193

203

x

cpeS/cpeT

Glr1538

183

x

-


Prochlorococcus marinus

MIT 9211

PE

P9211_07167

192

x

cpeS/cpeT

All adjacent to the α- and β- subunit of phycoerythrin

CCMP1375

Orf195

195

x

cpeS/cpeT

MIT 9313

PMT1678

239

x

cpeS/cpeT

NATL2A

PMN2A_1676

199

x

cpeS/cpeT

SS120

Pro0342

195

x

pro0347/pucC/ppeC/pro0344/cpeS/cpeT


Guillardia theta

PE

Orf222

222


Cyanidioschyzon merolae

PC

CMK263C

263


Bacteriophage S-PM2

host = Synechococcus

S-PM2p215

175


Oryza sativa

LOC_Os11g32160

275


Arabidopsis thaliana

AT5G51020

269


Cyanobacterial and eukaryotic homologous of Orf222 were obtained by blast search analysis of the NCBI database, as well as the JGI and Cyanobase. The (-) indicates that no adjacent genes in the same orientation were detectable. Orf222 homologous genes are in bold. PBP = phycobiliproteins (except of allophycocyanin), PC = phycocyanin, PE = phycoerythrin, PEC phycoerythrocyanin.

Bolte et al. BMC Plant Biology 2008 8:56   doi:10.1186/1471-2229-8-56

Open Data