Table 3 |
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|
Identification of below-low parent (BLP) expression patterns |
||||||||
|
B84 × B73 |
B37 × B73 |
Oh43 × B73 |
Oh43 × Mo17 |
Mo17 × B73 |
B73 × Mo17 |
Total (%) |
||
|
|
||||||||
|
#DE Genes* |
920 |
1979 |
2851 |
2430 |
2570 |
2530 |
13280 |
|
|
#DE Genes F1<LP** |
9 |
98 |
150 |
111 |
86 |
84 |
538 (4.05%) |
|
|
#DE Genes F1<LP (p < 0.05)*** |
1 |
26 |
41 |
31 |
20 |
9 |
128 (0.96%) |
|
|
|
||||||||
|
BLP fold-change |
#Sig. genes w/ LP/F1 1.0–1.1 |
0 |
6 |
9 |
12 |
6 |
5 |
38 (0.29%) |
|
#Sig. genes w/ LP/F1 1.1–1.2 |
1 |
10 |
24 |
11 |
7 |
2 |
55 (0.41%) |
|
|
#Sig. genes w/ LP/F1 1.2–1.5 |
0 |
8 |
5 |
6 |
7 |
1 |
27 (0.20%) |
|
|
#Sig. genes w/ LP/F1 1.5–2.0 |
0 |
1 |
1 |
2 |
0 |
0 |
4 (0.03%) |
|
|
#Sig. genes w/ LP/F1 > 2.0 |
0 |
1 |
2 |
0 |
0 |
1 |
4 (0.03%) |
|
|
|
||||||||
|
*Based on FDR < 0.15 and at least one genotype (parent and/or hybrid) average microarray signal > 50 **Subset of DE genes with microarray signal intensities outside of the parental range (AHP or BLP, respectively) ***Subset of DE genes with microarray signal intensities significantly outside of the parental range (based on one-tailed t-tests) |
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|
Stupar et al. BMC Plant Biology 2008 8:33 doi:10.1186/1471-2229-8-33 |
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