Table 3 |
||||||||||
|
Tall fescue HSP and heat shock transcription factor (HSF) gene expression |
||||||||||
|
Unigene IDa |
DR1 |
DS1 |
FSS |
TFM |
HSS |
LF1 |
RT1 |
ST1 |
SD1 |
Annotation |
|
|
||||||||||
|
Low molecular weight (LMW) HSPs |
||||||||||
|
|
||||||||||
|
TC3677 |
0 b |
0 |
0 |
0 |
4 |
0 |
0 |
0 |
0 |
UP|HSP11_WHEAT (P12810) 16.9 kDa class I hsp |
|
DT693759 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
PRF|1908439B|445140|1908439B hsp 16.9B. {O. sativa} |
|
DT696482 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
UP|Q40866_PENAM (Q40866) hsp 17.0 |
|
TC739 |
0 |
0 |
0 |
0 |
8 |
0 |
0 |
0 |
0 |
UP|Q96458_HORVU (Q96458) 17 kDa class I small hsp |
|
DT706802 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
PRF|NP_175807.1|17.4 kDa class III hsp {A.thaliana} |
|
TC4040 |
48 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
UP|Q94KM0_WHEAT (Q94KM0) Small hsp HSP17.8 |
|
TC2206 |
0 |
0 |
0 |
0 |
2 |
0 |
2 |
2 |
0 |
UP|Q40867_PENAM (Q40867) hsp 17.9 |
|
TC2205 |
0 |
0 |
8 |
0 |
12 |
0 |
0 |
0 |
0 |
UP|Q8W007_ORYSA (Q8W007) Class I lmw-hsp 17.9 |
|
DT684410 |
0 |
0 |
8 |
0 |
0 |
0 |
0 |
0 |
0 |
UP|Q5R1P5_BOMMO (Q5R1P5) hsp21.4 |
|
TC2142 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
0 |
0 |
UP|O64960_MAIZE (O64960) lmw-hsp (HSP22) |
|
TC1295 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
0 |
0 |
PIR|S65051|S65051 lmw-hsp (Hsp22.5) {G. max} |
|
TC2141 |
0 |
0 |
0 |
0 |
28 |
0 |
0 |
0 |
0 |
UP|Q9ZP25_WHEAT (Q9ZP25) sm Hsp23.5 precursor |
|
DT695134 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
UP|Q41568_WHEAT (Q41568)hsp 26.6B |
|
TC2085 |
0 |
0 |
8 |
0 |
18 |
0 |
0 |
0 |
0 |
UP|Q8GV35_9POAL (Q8GV35) Chl lmw-hsp HSP26.7b |
|
DT685446 |
0 |
0 |
8 |
0 |
0 |
0 |
0 |
0 |
0 |
UP|Q8GV37_9POAL (Q8GV37) Chl lmw-hsp HSP26.8 |
|
DT693763 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
UP|O80432_LYCES (O80432) Mitochondrial smhsp |
|
TC4358 |
0 |
0 |
0 |
0 |
10 |
0 |
0 |
2 |
0 |
PDB|1GME_A|1GME_Eukaryotic smhsp {T. aestivum} |
|
TC501 |
0 |
0 |
0 |
0 |
12 |
0 |
0 |
0 |
0 |
UP|Q40978_PAPSO (Q40978) lmw-hsp |
|
DT695083 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
UP|Q41218_SOLTU (Q41218) smhsp homolog |
|
DT684541 |
0 |
0 |
8 |
0 |
0 |
0 |
0 |
0 |
0 |
UP|Q4ZHH0_9BASI (Q4ZHH0) smhsp frag |
|
DT713365 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
UP|Q58FS1_TRIHA (Q58FS1) smhsp |
|
|
||||||||||
|
Unigene ID |
DR1 |
DS1 |
FSS |
TFM |
HSS |
LF1 |
RT1 |
ST1 |
SD1 |
Annotation |
|
|
||||||||||
|
TC4794 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
0 |
0 |
UP|Q8L470_LYCES (Q8L470) smhsp |
|
HSP 70 |
||||||||||
|
|
||||||||||
|
DT679789 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
GB|CAA54419.1|450880|ATHSC701 hs cognate 70-1 {A. thaliana} |
|
TC64 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
4 |
0 |
UP|HSP72_LYCES (P27322) hs cognate 70 kDa prot 2 |
|
DT691644 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
UP|HSP74_HUMAN (P34932) hs 70 kDa protein 4 (HSP70RY) |
|
DT695482 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
UP|HSP7S_PEA (Q02028) Stromal 70 kDa hs-related protein |
|
DT682340 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
UP|O50036_SPIOL (O50036) hs 70 protein |
|
DT692072 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
UP|O04056_CITLA (O04056) hsp precursor |
|
TC63 |
8 |
14 |
0 |
38 |
4 |
4 |
21 |
2 |
0 |
UP|Q84TA1_ORYSA (Q84TA1) hspgnate 70 |
|
|
||||||||||
|
High molecular weight HSPs |
||||||||||
|
|
||||||||||
|
DT692018 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
UP|Q9ZRG0_WHEAT (Q9ZRG0) hsp |
|
TC149 |
0 |
0 |
0 |
4 |
2 |
4 |
2 |
2 |
0 |
UP|HSP82_ORYSA (P33126) hsp |
|
TC5768 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
0 |
0 |
PIR|A48426|A48426 HSP82 – maize {Z. mays} |
|
TC148 |
0 |
0 |
0 |
12 |
2 |
0 |
4 |
10 |
4 |
UP|Q7XJ80_HORVU (Q7XJ80) Cytosolic hsp 90 |
|
DT684503 |
0 |
0 |
8 |
0 |
0 |
0 |
0 |
0 |
0 |
UP|Q45XA1_BEMTA (Q45XA1) 90 kDa hsp |
|
DT710057 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
UP|HS101_ORYSA (Q6F2Y7) hsp 101 |
|
DT697638 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
UP|Q6Z517_ORYSA 101 kDa hsp; HSP101-like |
|
TC2500 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
8 |
UP|Q9LF37_ARATH (Q9LF37) ClpB hsp -like |
|
TC950 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
4 |
UP|HS105_HUMAN (Q92598) hsp 105 kDa |
|
|
||||||||||
|
Unclassified HSPs |
||||||||||
|
|
||||||||||
|
TC5675 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
UP|O23638_ARATH (O23638) hsp precursor |
|
DT708187 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
UP|O49457_ARATH (O49457) hsp |
|
TC3195 |
0 |
0 |
0 |
0 |
2 |
0 |
2 |
0 |
0 |
UP|P93437_ORYSA (P93437) hsp |
|
TC2515 |
0 |
4 |
0 |
0 |
0 |
2 |
0 |
0 |
4 |
UP|Q43638_SECCE (Q43638) hsp |
|
TC1929 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
0 |
0 |
UP|Q4LDR0_LYCES (Q4LDR0) hsp |
|
|
||||||||||
|
Unigene ID |
DR1 |
DS1 |
FSS |
TFM |
HSS |
LF1 |
RT1 |
ST1 |
SD1 |
Annotation |
|
|
||||||||||
|
TC4728 |
0 |
0 |
8 |
0 |
4 |
0 |
0 |
0 |
0 |
UP|Q5ZBN6_ORYSA (Q5ZBN6) hs-like protein |
|
DT702768 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
UP|Q6ER93_ORYSA (Q6ER93) hsp -like |
|
TC1335 |
0 |
0 |
0 |
2 |
0 |
0 |
2 |
0 |
0 |
UP|Q6K2F0_ORYSA (Q6K2F0) hsp -like |
|
TC3822 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
2 |
0 |
UP|Q96269_ARATH (Q96269) hsp |
|
TC3007 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
4 |
UP|Q9FHQ0_ARATH (Q9FHQ0) Calmodulin-binding hsp |
|
DT710639 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
UP|STIP_SOYBN (Q43468) hsp STI (Stress inducible pron) (GmSTI) |
|
DT710259 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
PRF|NP_175842.1 hs family protein {A. thaliana} |
|
DT690417 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
PRF|NP_187434.1|NP_187434 hsp -related {A. thaliana} |
|
TC4128 |
0 |
4 |
0 |
4 |
4 |
0 |
9 |
4 |
0 |
PRF|NP_191819.1 DNAJ hs family protein {A. thaliana} |
|
DT679933 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
PRF|NP_194764.1 hsp -related {A. thaliana} |
|
|
||||||||||
|
HSFs |
||||||||||
|
|
||||||||||
|
DT694163 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
UP|Q6VBB5_ORYSA (Q6VBB5) hsf RHSF2 |
|
DT694677 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
GB|AAQ23057.1|33591100|hsf RHSF3 {O. sativa} |
|
DT688511 |
0 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
GB|AAQ23059.1|33591104|hsf RHSF5 {O. sativa} |
|
TC2134 |
14 |
0 |
0 |
0 |
10 |
0 |
0 |
0 |
8 |
GB|AAQ23060.1|33591106 hsf RHSF6 {O. sativa} |
|
TC5588 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
0 |
0 |
GB|AAQ23061.1|33591108|heat shock factor RHSF7 {O. sativa} |
|
DT705016 |
0 |
0 |
0 |
0 |
0 |
0 |
2 |
0 |
0 |
GB|AAQ23062.1|33591110|hsf RHSF8 {O. sativa} |
|
TC3473 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
0 |
0 |
UP|Q657C0_ORYSA (Q657C0) hs tf HSF8-like |
|
DT679516 |
0 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
UP|Q6Z7B3_ORYSA (Q6Z7B3) hsf protein hsf8-like |
|
TC3759 |
0 |
0 |
0 |
0 |
0 |
0 |
4 |
0 |
0 |
UP|Q94J16_ORYSA (Q94J16) hsf RHSF9 |
|
TC1477 |
0 |
2 |
0 |
0 |
2 |
0 |
0 |
0 |
0 |
UP|Q5Z9D6_ORYSA (Q5Z9D6) hsf RHSF13-like |
|
|
||||||||||
|
aUnigene ID. DT = singleton, TC = tentative consensus, Drought stressed root = DR1, Drought stressed shoot = DS1, Field stressed shoot = FSS, Floral meristem = TFM, Heat stressed shoot = HSS, Greenhouse grown leaf = LF1, Greenhouse grown root = RT1, Field grown stem = ST1, Young seedling = SD1. b Numbers of normalized ESTs found matching known HSPs or HSFs were listed in individual library. |
||||||||||
|
Mian et al. BMC Plant Biology 2008 8:27 doi:10.1186/1471-2229-8-27 |
||||||||||
