Research article  

Transcriptome-wide identification and characterization of miRNAs from Pinus densata

Li-Chuan Wan, Haiyan Zhang, Shanfa Lu, Liang Zhang, Zongbo Qiu, Yuanyuan Zhao, Qing-Yin Zeng, Jinxing Lin BMC Genomics 2012, 13:132 (6 April 2012)

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Research article  

Identification of microRNAs from Amur grape (vitis amurensis Rupr.) by deep sequencing and analysis of microRNA variations with bioinformatics

Chen Wang, Jian Han, Chonghuai Liu, Korir Kibet, Emrul Kayesh, Lingfei Shangguan, Xiaoying Li, Jinggui Fang BMC Genomics 2012, 13:122 (29 March 2012)

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Research article  

The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis

Domenico De Paola, Federica Cattonaro, Domenico Pignone, Gabriella Sonnante BMC Genomics 2012, 13:41 (24 January 2012)

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Research article  

Sculpting the maturation, softening and ethylene pathway: The influences of microRNAs on tomato fruits

Jinhua Zuo, Benzhong Zhu, Daqi Fu, Yi Zhu, Yuanzheng Ma, Lihong Chi, Zheng Ju, Yunxiang Wang, Baiqiang Zhai, Yunbo Luo BMC Genomics 2012, 13:7 (9 January 2012)

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Research article  

Identification of novel maize miRNAs by measuring the precision of precursor processing

Yinping Jiao, Weibin Song, Mei Zhang, Jinsheng Lai BMC Plant Biology 2011, 11:141 (20 October 2011)

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Research article  

Identification and comparative analysis of drought-associated microRNAs in two cowpea genotypes

Blanca E Barrera-Figueroa, Lei Gao, Ndeye N Diop, Zhigang Wu, Jeffrey D Ehlers, Philip A Roberts, Timothy J Close, Jian-Kang Zhu, Renyi Liu BMC Plant Biology 2011, 11:127 (17 September 2011)

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Poster presentation  

Deep sequencing combined with microarray hybridization to identify novel and conserved microRNAs during somatic embryogenesis of hybrid yellow-poplar (Liriodendron chinense (Hemsl.) Sarg. X L. tulipifera Linn.)

Li Tingting, Chen Jinhui, Shi Jisen, Xu Jin BMC Proceedings 2011, 5(Suppl 7):P74 (13 September 2011)

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Research article  

Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing

Tianzuo Wang, Lei Chen, Mingui Zhao, Qiuying Tian, Wen-Hao Zhang BMC Genomics 2011, 12:367 (15 July 2011)

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Research article  

Characterization of the small RNA component of the transcriptome from grain and sweet sorghum stems

Martín Calviño, Rémy Bruggmann, Joachim Messing BMC Genomics 2011, 12:356 (8 July 2011)

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Research  

Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa

Li Wei, Long Yan, Tai Wang Genome Biology 2011, 12:R53 (16 June 2011)

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Research article  

Diverse set of microRNAs are responsive to powdery mildew infection and heat stress in wheat (Triticum aestivum L.)

Mingming Xin, Yu Wang, Yingyin Yao, Chaojie Xie, Huiru Peng, Zhongfu Ni, Qixin Sun BMC Plant Biology 2010, 10:123 (24 June 2010)

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Correction  

Correction: High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera

Erica Mica, Viviana Piccolo, Massimo Delledonne, Alberto Ferrarini, Mario Pezzotti, Cesare Casati, Cristian Del Fabbro, Giorgio Valle, Alberto Policriti, Michele Morgante, Graziano Pesole, M Enrico Pè, David S Horner BMC Genomics 2010, 11:109 (12 February 2010)

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Research article  

Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development

Guru Jagadeeswaran, Yun Zheng, Niranji Sumathipala, Haobo Jiang, Estela L Arrese, Jose L Soulages, Weixiong Zhang, Ramanjulu Sunkar BMC Genomics 2010, 11:52 (20 January 2010)

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Research article  

High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera

Erica Mica, Viviana Piccolo, Massimo Delledonne, Alberto Ferrarini, Mario Pezzotti, Cesare Casati, Cristian Del Fabbro, Giorgio Valle, Alberto Policriti, Michele Morgante, Graziano Pesole, M Enrico Pè, David S Horner BMC Genomics 2009, 10:558 (25 November 2009)

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Software  

miRExpress: Analyzing high-throughput sequencing data for profiling microRNA expression

Wei-Chi Wang, Feng-Mao Lin, Wen-Chi Chang, Kuan-Yu Lin, Hsien-Da Huang, Na-Sheng Lin BMC Bioinformatics 2009, 10:328 (12 October 2009)

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Research article  

Parallel DNA pyrosequencing unveils new zebrafish microRNAs

Ana R Soares, Patrícia M Pereira, Bruno Santos, Conceição Egas, Ana C Gomes, Joel Arrais, José L Oliveira, Gabriela R Moura, Manuel AS Santos BMC Genomics 2009, 10:195 (27 April 2009)

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Research article  

Cloning, characterization and expression analysis of porcine microRNAs

Alavala Reddy, Yun Zheng, Guru Jagadeeswaran, Simone L Macmil, Wiley B Graham, Bruce A Roe, Udaya Desilva, Weixiong Zhang, Ramanjulu Sunkar BMC Genomics 2009, 10:65 (5 February 2009)

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Research article  

Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice

Séverine Lacombe, Hiroshi Nagasaki, Carole Santi, David Duval, Benoît Piégu, Martine Bangratz, Jean-Christophe Breitler, Emmanuel Guiderdoni, Christophe Brugidou, Judith Hirsch, Xiaofeng Cao, Claire Brice, Olivier Panaud, Wojciech M Karlowski, Yutaka Sato, Manuel Echeverria BMC Plant Biology 2008, 8:123 (2 December 2008)

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Research article  

In silico identification of conserved microRNAs in large number of diverse plant species

Ramanjulu Sunkar, Guru Jagadeeswaran BMC Plant Biology 2008, 8:37 (16 April 2008)

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