|
Cis-element candidates selected from the pre-compiled list, likely corresponding to Aux/IAA genes. |
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| Motif |
Transcription Factor Family*1 |
Hit TU in target group*1 |
Hit TU in whole*2 |
Lift |
|
|
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| ([ACGT]GAA [ACGT]){3} |
HSF |
4 |
512 |
6.40 |
| TGACAGGT |
Helix-turn-helix(HTH) |
3 |
527 |
4.66 |
| CCAC [AC]A [ACGT] [AC] [ACGT] [CT] [AC] |
LIM finger |
9 |
3013 |
2.45 |
| GG [ACGT]CCCAC |
Helix-loop-helix factors(bHLH) |
10 |
3601 |
2.28 |
| GTGG [ACGT]CCC |
Helix-loop-helix factors(bHLH) |
6 |
2189 |
2.25 |
| CAACA [ACGT]*CACCTG |
RAV |
5 |
1865 |
2.20 |
| A [TC]G [AT]A [CT]CT |
EIL |
8 |
3039 |
2.16 |
| AATATATTT |
Helix-turn-helix(HTH) |
3 |
1405 |
1.75 |
| TGTCTC |
ARF |
7 |
3825 |
1.50 |
| TGACGTGG |
NAC |
1 |
627 |
1.31 |
| CCA [ACGT]TG |
LEAFY |
19 |
12084 |
1.29 |
| CACCC |
Cys2His2 zinc finger;RING finger |
19 |
12165 |
1.28 |
| CC [AT]{6}GG |
MADS(CArG boxes) |
2 |
1392 |
1.18 |
| AATAAA [CT]AAA |
Helix-turn-helix(HTH) |
1 |
715 |
1.15 |
| CGTG [TC]G |
BZR(BES1) |
9 |
6544 |
1.13 |
| [GC] [GC] [GA]CGCC |
BRE |
10 |
7543 |
1.09 |
| AGCCGCC |
EREBP |
2 |
1523 |
1.08 |
| CCAAT |
CCAATbox;Co-like |
19 |
14497 |
1.07 |
| TATA [AT]A |
TATAbox |
22 |
16849 |
1.07 |
| [TA]AAAG |
Dof |
27 |
21329 |
1.04 |
| CA [ACGT] [ACGT]TG |
Helix-loop-helix factors(bHLH);Helix-loop-helix_leucine zipper factors(bHLH-ZIP) |
28 |
22405 |
1.02 |
| T{4,6} |
JUMONJI |
28 |
22699 |
1.01 |
| [CT] [CT]A [ACGT] [TA] [CT] [CT] |
Inr |
28 |
22899 |
1.00 |
| (GA){2,}| (TC){2,} |
BBR/BPC |
28 |
22911 |
1.00 |
|
*1 The number of TU possessing the designated motif within 28 TUs of the target gene list. *2 The number of TU possessing the designated motif within 22943 TUs stored in KOME database. | ||||
Doi et al. BMC Plant Biology 2008 8:20 doi:10.1186/1471-2229-8-20 |
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