Table 5

Haplotypes based on single nucleotide polymorphisms (SNPs) in the 4-coumarate:CoA ligase 2(4CL2) gene of maize and average phenotypic values of lines included in individual haplotypes. Numbers denote bp position of individual SNPs in the alignment.

11
 22
 32
 72
 112
 123
 132
 162
 192
 217
 372
 460
 Lines (Total = 34)
 NDF
 IVDOM
 DNDF



s












H_1
 A
 A
 G
 G
 A
 G
 T
 G
 C
 A
 A
 C
 AS01, 04, 06, 14, 15, 18, 22, 24
 54.9
 74.0
 56.7
H_2
 G
 .
 .
 .
 G
 .
 C
 .
 T
 G
 C
 .
 AS03, 08–11, 17, 19–21, 30, 31, 35, 36
 56.6
 72.3
 55.2
H_3
 G
 T
 .
 A
 G
 T
 C
 A
 .
 .
 .
 .
 AS12, 13
 57.6
 74.7
 59.0
H_4
 .
 .
 .
 .
 .
 .
 .
 .
 .
 .
 .
 A
 AS02
 52.7
 74.6
 56.2
H_5
 G
 .
 .
 .
 .
 .
 .
 .
 .
 .
 C
 A
 AS07, 23, 25, 26
 53.2
 76.4
 59.0
H_6
 G
 T
 .
 A
 G
 T
 C
 A
 .
 .
 C
 A
 AS05, 28, 29, 32, 39
 57.9
 71.9
 55.5
H_7
 G
 .
 A
 .
 G
 .
 C
 .
 .
 .
 .
 .
 AS40
 59.0
 73.9
 59.1

NDF: neutral detergent fiber; IVDOM: in vitro digestibility of organic matter; DNDF: digestibility of neutral detergent fiber

s: singleton

Andersen et al. BMC Plant Biology 2008 8:2   doi:10.1186/1471-2229-8-2