Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice

doi:10.1186/1471-2229-8-123

BMC Plant Biology
Volume 8

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Lacombe S
Nagasaki H
Santi C
Duval D
Piégu B
Bangratz M
Breitler JC
Guiderdoni E
Brugidou C
Hirsch J
Cao X
Brice C
Panaud O
Karlowski WM
Sato Y
Echeverria M

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Lacombe S
Nagasaki H
Santi C
Duval D
Piégu B
Bangratz M
Breitler JC
Guiderdoni E
Brugidou C
Hirsch J
Cao X
Brice C
Panaud O
Karlowski WM
Sato Y
Echeverria M
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Research article

Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice

Séverine Lacombe^*¹ , Hiroshi Nagasaki^*² , Carole Santi^*¹ , David Duval¹ , Benoît Piégu¹ , Martine Bangratz¹ , Jean-Christophe Breitler³ , Emmanuel Guiderdoni³ , Christophe Brugidou¹ , Judith Hirsch⁴ , Xiaofeng Cao⁵ , Claire Brice¹ , Olivier Panaud¹ , Wojciech M Karlowski⁶ , Yutaka Sato² and Manuel Echeverria¹

¹Laboratoire Génome et Développement des Plantes, UMR5096, Université de Perpignan via Domitia – CNRS-IRD, 52, Av. Paul Alduy, 66860 Perpignan Cedex, France

²Graduate School of Bioagricultural Sciences, Nagoya University, Chikusa, Nagoya 464-8601, Japan

³DAP, UMR 1098, Université de Montpellier II-CIRAD-INRA-SUPAGRO 2477 Avenue Agropolis, F-34398 Montpellier Cedex 5, France

⁴INRA-SUPAGRO, UMR BGPI, Campus Baillarguet, F-34398 Montpellier Cedex 05, France

⁵State Key Laboratory of Plant Genomics and National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, PR China

⁶Bioinformatic Laboratory, A. Mickiewicz University, Umultowska 89, 61-614, Poznan, Poland

author email corresponding author email* Contributed equally

BMC Plant Biology 2008, 8:123doi:10.1186/1471-2229-8-123


Published:	2 December 2008

Additional files

Additional file 1:

Genomic locations and organizations of osa-miR827a and osa-miR1874 genes. The genomic locations and organizations of osa-miR827a and osa-miR1874 are shown schematically in panels A and B, respectively.

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Additional file 2:

Predicted targets for osa-miR2055, osa-miR1428e, and osa-miR1874. Predicted targets for osa-miR2055, osa-miR1428e, and osa-miR1874 are shown in panels A, B and C, respectively. Red and blue characters represent the sequences of putative targets and miRNAs, respectively.

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