Table 3

Thellungiela genes showing low identity against Arabidopsis genes classified in 'transport' using GO slim^a

Clone name

InterPro ID

Description

AGI code^b

E value c

RTFL01-07-H15

IPR001807

Chloride channel, voltage gated

AT5G40890.2

1.00E-49

RTFL01-12-M19

IPR000194

ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding

AT1G60190.1

6.00E-45

RTFL01-29-P17

IPR000463

Cytosolic fatty-acid binding

AT2G25590.1

8.00E-45

RTFL01-05-O18

IPR000803

Facilitated glucose transporter

AT3G58130.2

5.00E-43

RTFL01-21-M15

IPR003612

Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor

AT2G38540.1

5.00E-43

RTFL01-24-G14

IPR000264

Serum albumin

AT5G09460.1

5.00E-43

RTFL01-49-P05

IPR003612

Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor

AT2G38540.1

5.00E-43

RTFL01-36-E03

IPR007271

Nucleotide-sugar transporter

AT5G65000.2

3.00E-41

RTFL01-05-G14

IPR001993

Mitochondrial substrate carrier

AT5G42130.1

3.00E-38

RTFL01-14-G02

IPR000194

ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding

AT1G08010.2

1.00E-34

RTFL01-43-C04

IPR002075

Nuclear transport factor 2

AT1G69250.1

4.00E-34

RTFL01-21-H04

IPR004240

Nonaspanin (TM9SF)

AT4G12650.1

5.00E-34

RTFL01-18-D17

IPR006455

Homeobox domain, ZF-HD class

AT5G42780.1

2.00E-31

RTFL01-07-P02

IPR005829

Sugar transporter superfamily

AT4G10410.1

2.00E-30

RTFL01-08-J20

IPR001757

ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter

AT2G31150.1

3.00E-28

RTFL01-06-N05

IPR003612

Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor

AT3G18840.2

1.00E-27

RTFL01-40-M18

IPR004240

Nonaspanin (TM9SF)

AT1G10950.1

1.00E-27

RTFL01-11-J21

IPR000194

ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding

AT3G24503.1

7.00E-27

RTFL01-39-I23

IPR008389

ATPase, V0 complex, subunit H

AT4G26710.2

2.00E-23

RTFL01-52-J14

IPR000194

ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding

AT3G54760.1

5.00E-21

RTFL01-33-P14

IPR000568

ATPase, F0 complex, subunit A

AT4G13740.1

6.00E-15

RTFL01-01-D06

IPR000194

ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding

AT1G29760.1

6.00E-15

RTFL01-20-A07

IPR000194

ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding

AT1G29760.1

6.00E-15

RTFL01-28-P24

IPR001622

Voltage-dependent potassium channel

AT5G55430.1

3.00E-13

RTFL01-25-D12

IPR000245

ATPase, V0 complex, proteolipid subunit C,

AT1G75630.1

7.00E-08

RTFL01-22-P12

IPR000264

Serum albumin

AT5G09460.1

1.00E-07

RTFL01-03-P24

IPR006121

Heavy metal transport/detoxification protein

AT5G11890.1

2.00E-06

RTFL01-40-P02

IPR002946

Intracellular chloride channel

AT5G08450.3

3.00E-04

RTFL01-03-G04

IPR003663

Sugar transporter

AT5G50540.1

0.001

RTFL01-11-N06

IPR000109

TGF-beta receptor, type I/II extracellular region

AT3G55610.1

0.019

RTFL01-13-J08

IPR005829

Sugar transporter superfamily

AT5G49665.1

0.073

RTFL01-11-G05

IPR007114

Major facilitator superfamily

AT1G05300.2

0.075

RTFL01-17-J21

IPR000194

ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding

AT4G19830.1

0.25

RTFL01-38-L07

IPR011116

SecA Wing and Scaffold

AT3G55160.1

0.76

RTFL01-20-G20

IPR004100

ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal

AT5G60470.1

1.2

a The 9,569 nonredundant Thellungiella genes were submitted to InterPro. The 763 Thellungiella genes exhibiting low identity (E value > 1.0e-50) against Arabidopsis genes assigned to InterPro ID were classified according to the GO terms using GO slim.

b Arabidopsis gene showing the highest identity with the Thellungiella cDNA clone.

c Sequence identity between the Thellungiella clone and the Arabidopsis counterpart (show AGI code) using BLASTX searches

against Arabidopsis database.

Taji et al. BMC Plant Biology 2008 8:115   doi:10.1186/1471-2229-8-115