Additional file 2.

CBF1 sequence polymorphism. Description: (A) promoter region (accession nos.: EF522995~EF523027); (B) transcriptional unit (TU) region (accession nos.: EF522962~EF522994); UTR, untranslated region; CDS, coding sequence. Only polymorphic sites are listed. The number of each polymorphic site is listed according to its position in the sequence alignment, and the greater the number is, the closer to the transcriptional starting site it is. Dots represent nucleotides and indels identical to the Col reference; deletions and insertions related to the Col sequence are indicated by minus (-) and plus (+) symbols, respectively. The sequences of indels of more than 1 bp (base pair) are not shown. The length of each indel is listed at the bottom. The bold lines above the TU indicate the regions of the 5'UTR, CDS, and 3'UTR. Regions with long sequence deletions are blank; the ABRC (Arabidopsis Biological Resource Center) [73] stock numbers are next to the abbreviation of ecotypes. The promoter region from site 680 to the end (261 bp) was substituted by a 211-bp insertion in Ita-0.

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Lin et al. BMC Plant Biology 2008 8:111   doi:10.1186/1471-2229-8-111