Identification of genic moss SSR markers and a comparative analysis of twenty-four algal and plant gene indices reveal species-specific rather than group-specific characteristics of microsatellites

Mark von Stackelberg , Stefan A Rensing and Ralf Reski

Plant Biotechnology, Faculty of Biology, Schaenzlestr. 1, 79104 Freiburg, Germany

author email corresponding author email

BMC Plant Biology 2006, 6:9doi:10.1186/1471-2229-6-9


Published:	30 May 2006

Additional files

Additional file 5:

PDF file with a table of the analysed plant gene indices. Tabular summary of the analysed plant gene indices including plant species name, taxonomic clade, source of database, release date, release version if specified in brackets, total number of sequences, total size of the databases in basepairs, average sequence length in basepairs and the GC-content of the databases.

Format: PDF Size: 33KB Download file

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Additional file 1:

PDF file with the original data used to prepare the diagram in Figure 3. The 1 contains the sizes of the analysed gene indices in bp, the total counts of detected SSRs, the total counts of dimer, trimer, tetramer, pentamer and hexamer SSRs as well as the calculated SSR counts per megabase for dimer, trimer, tetramer, pentamer and hexamer repeats.

Format: PDF Size: 14KB Download file

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Additional file 2:

PDF file with the original data used to prepare the diagram in Figure 4. The 2 contains the average length of dimer as well as trimer SSRs in the analysed 24 plant gene indices with the standard deviation in bp.

Format: PDF Size: 12KB Download file

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Additional file 3:

PDF file with the original data used to prepare the diagram in Figure 5. The 3 contains the sizes of the analysed gene indices in bp, the total dimer SSR counts, the counts of the four canonical dimer SSR motifs as well as their calculated counts per megabase.

Format: PDF Size: 15KB Download file

This file can be viewed with: Adobe Acrobat Reader

Additional file 4:

PDF file with the original data used to prepare the diagram in Figure 6. The 4 contains the sizes of the analysed gene indices in bp, the total trimer SSR counts, the counts of the 10 canonical dimer SSR motifs as well as their calculated counts per megabase.

Format: PDF Size: 15KB Download file

This file can be viewed with: Adobe Acrobat Reader