Table 1

Repeated sequences in the Citrus sinensis chloroplast genome.

Repeat Number

Size(bp)

Repeat

Location


1

30

I

IGS (trnS-GCU, trnS-GGA)

2

30

I

IGS (rpl33 – rps18)

3

30

D

IGS (rrn5 – rrn4.5)

4

31

I

IGS (petN – psbM)

5

31

D

IGS (trnG-GCC – trnR-UCU, rpl32 – trnL-UAG)

6

31

D

IGS (trnsG-GCC – trnR-UCU, rpl32 – trnL-UAG)

7

31

D

IGS (trnF-GAA – ndhJ, rps12_3end – trnV-GAC)

8

31

I

IGS (trnF-GAA – ndhJ, trnV-GAC – rps12_3end)

9

32

D

IGS (trnG-GCC – trnR-UCU)

10

33

I

IGS (atpF – atpH)

11

34

I

IGS (psbZ – trnG-GCC)

12

34

I

IGS (trnS-GCU – trnG-GCC, psbM – trnD-GUC)

13

34

D

IGS (rrn4.5 – rrn5)

14

34

I

IGS (rrn4.5 – rrn5)

15

34

I

IGS (rrn4.5 – rrn5)

16

34

D

IGS (rrn5 – rrn4.5)

17

36

I

IGS (rpoB – trnC-GCA)

18

36

I

IGS (rpl32 – trnL-UAG)

19

36

I

Intron (ndhA), IGS (trnV-GAC – rps12_3end)

20

36

D

IGS (rps12_3end – trnV-GAC), Intron (ndhA – ndhA)

21

38

I

IGS (ycf4 – cemA)

22

40

I

IGS (psbT – psbN)

23

41

D

IGS (rps12_3end – trnV-GAC), Intron (ndhA – ndhA)

24

41

I

Intron (ndhA – ndhA), IGS (trnV-GAC – rps12_3end)

25

41

D

psaB, psaA

26

44

D

psbB, psaA

27

48

I

IGS (petN – psbM)

28

51

I

IGS (trnG-GCC – trnR-UCU)

29

53

I

IGS (trnS-GCU – trnG-GCC, psbM – trnD-GUC)


The table includes the number and location of the repeats ≥ 30 bp, with a sequence identity greater than or equal to 90% (i.e., Hamming distance of 3). I-Inverted, D-direct, IGS-Intergenic spacer region.

Bausher et al. BMC Plant Biology 2006 6:21   doi:10.1186/1471-2229-6-21

Open Data