Table 1

Repeated sequences in the Citrus sinensis chloroplast genome.
Repeat Number
 Size(bp)
 Repeat
 Location
1
 30
 I
 IGS (trnS-GCU, trnS-GGA)
2
 30
 I
 IGS (rpl33 – rps18)
3
 30
 D
 IGS (rrn5 – rrn4.5)
4
 31
 I
 IGS (petN – psbM)
5
 31
 D
 IGS (trnG-GCC – trnR-UCU, rpl32 – trnL-UAG)
6
 31
 D
 IGS (trnsG-GCC – trnR-UCU, rpl32 – trnL-UAG)
7
 31
 D
 IGS (trnF-GAA – ndhJ, rps12_3end – trnV-GAC)
8
 31
 I
 IGS (trnF-GAA – ndhJ, trnV-GAC – rps12_3end)
9
 32
 D
 IGS (trnG-GCC – trnR-UCU)
10
 33
 I
 IGS (atpF – atpH)
11
 34
 I
 IGS (psbZ – trnG-GCC)
12
 34
 I
 IGS (trnS-GCU – trnG-GCC, psbM – trnD-GUC)
13
 34
 D
 IGS (rrn4.5 – rrn5)
14
 34
 I
 IGS (rrn4.5 – rrn5)
15
 34
 I
 IGS (rrn4.5 – rrn5)
16
 34
 D
 IGS (rrn5 – rrn4.5)
17
 36
 I
 IGS (rpoB – trnC-GCA)
18
 36
 I
 IGS (rpl32 – trnL-UAG)
19
 36
 I
 Intron (ndhA), IGS (trnV-GAC – rps12_3end)
20
 36
 D
 IGS (rps12_3end – trnV-GAC), Intron (ndhA – ndhA)
21
 38
 I
 IGS (ycf4 – cemA)
22
 40
 I
 IGS (psbT – psbN)
23
 41
 D
 IGS (rps12_3end – trnV-GAC), Intron (ndhA – ndhA)
24
 41
 I
 Intron (ndhA – ndhA), IGS (trnV-GAC – rps12_3end)
25
 41
 D
 psaB, psaA
26
 44
 D
 psbB, psaA
27
 48
 I
 IGS (petN – psbM)
28
 51
 I
 IGS (trnG-GCC – trnR-UCU)
29
 53
 I
 IGS (trnS-GCU – trnG-GCC, psbM – trnD-GUC)

The table includes the number and location of the repeats ≥ 30 bp, with a sequence identity greater than or equal to 90% (i.e., Hamming distance of 3). I-Inverted, D-direct, IGS-Intergenic spacer region.

Bausher et al. BMC Plant Biology 2006 6:21   doi:10.1186/1471-2229-6-21