Table 2 |
|||
|
Summary of Mesostigma viride expressed genes obtained from four cDNA libraries (Meso 1 – Meso 4). |
|||
|
Category |
No of contigs |
||
|
|
|||
|
Mitochondrial1 |
36 |
||
|
Plastidic1 |
65 |
||
|
Bacterial2 |
193 |
||
|
Novel |
1691 |
||
|
with recognizable protein motif |
574 |
||
|
no protein motifs |
1117 |
||
|
Similarity |
1315 |
||
|
with known function3 |
574 |
||
|
unknown function4 |
395 |
||
|
low similarity5 |
346 |
||
|
Total Contigs |
3300 |
||
|
|
|||
|
1 sequences showing only similarity to organelle genomes. 2 sequences showing only similarity to bacterial sequences or the highest similarity to bacterial sequences; the origin of these putative bacterial contaminations is currently not clear, as bacteria-free cultures of Mesostigma were used. 3similarity to proteins with a well-defined function (BLAST score >100). 4similarity to conserved proteins with no established function (BLAST score >100). 5low similarity to proteins from a few organisms (BLAST score generally between 100 and 200); might reflect conserved protein domains. |
|||
|
Simon et al. BMC Plant Biology 2006 6:2 doi:10.1186/1471-2229-6-2 |
|||
