Table 5 |
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Genes co-expressed with the MADS domain factors GAGA1 (upregulated in disc flowers) and GRCD1 (upregulated in ray flowers) across 9 different microarray experiments when correlation coeffiecient >0.8 was used as criterion. |
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Correlation with GAGA1 |
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|
|
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|
Probe name |
Correlation |
Annotation |
|
|
||
|
PDY55-2 |
1 |
G. hybrida MADS-box protein, GAGA1 |
|
PDY8-4 |
0.963 |
G. hybrida MADS-box protein, GRCD2 |
|
G0000700006A2 |
0.943 |
G. hybrida MADS-box protein, GDEF2-like |
|
PDY119-4 |
0.936 |
G. hybrida MADS-box protein, GDEF2 |
|
G0000100028F12 |
0.935 |
RNA helicase |
|
PDY55-10 |
0.922 |
G. hybrida MADS-box protein, GAGA2 |
|
PDY55-8 |
0.921 |
G. hybrida MADS-box protein, GDEF1 |
|
G0000200013C10 |
0.917 |
G. hybrida MADS-box protein, GAGA1 |
|
G0000100027H2 |
0.913 |
MADS-box protein, GGLO1 |
|
G0000200001H1 |
0.903 |
Nucleoid DNA-binding-like protein. |
|
G0000400013D7 |
0.892 |
G. hybrida MADS-box protein, GDEF2 |
|
G0000200011D6 |
0.887 |
G. hybrida MADS-box protein, GGLO1 |
|
G0000100019F6 |
0.884 |
Putative VIP1 protein |
|
G1-5B |
0.882 |
G. hybrida MADS-box protein, GRCD4 |
|
PDY55-9 |
0.876 |
G. hybrida MADS-box protein, GGLO1 |
|
G0000200002A7 |
0.856 |
CHP-rich zinc-finger protein-like |
|
G0000700002E7 |
0.850 |
Squamosa Promoter Binding Protein-homologue 3 |
|
G0000100021C10 |
0.840 |
Putative transcription factor |
|
G0000200059G3 |
0.838 |
Putative PRP19-like spliceosomal protein |
|
G0000200004G12 |
0.834 |
Putative RNA-binding protein |
|
G0000100022G6 |
0.832 |
MYB-related protein 305 |
|
G0000400001G12 |
0.831 |
MADS-box protein, GRCD2 |
|
G0000200006H5 |
0.829 |
Putative TATA binding protein-associated factor |
|
G0000300021A5 |
0.818 |
Putative RING zinc-finger protein |
|
PHEP7 |
0.805 |
G. hybrida MADS-box protein, GSQUA1 |
|
|
||
|
Correlation with GRCD1 |
||
|
|
||
|
Probe name |
Correlation |
Annotation |
|
|
||
|
PGTY3 XHO |
1 |
G. hybrida MADS-box protein, GRCD1 |
|
G0000100015G4 |
0.988 |
MADS-box protein, GRCD1 |
|
G0000300001D6 |
0.929 |
MYB26 |
|
G0000700011D8 |
0.915 |
Pollen specific LIM-domain protein 1B |
|
G0000800020B7 |
0.902 |
Putative RNA binding protein |
|
G0000500017B2 |
0.879 |
NAM-like protein |
|
G0000200011F5 |
0.861 |
Nucleoid DNA-binding-like protein |
|
G1-21A03 |
0.834 |
G. hybrida MADS-box protein, Tm3-like |
|
G0000700003A3 |
0.826 |
MADS-box protein, GRCD5 |
|
G0000100001D9 |
0.814 |
DNA-binding protein, GBP16. |
|
G0000200014A7 |
0.801 |
MADS-box protein, GRCD3 |
|
|
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|
Laitinen et al. BMC Plant Biology 2006 6:11 doi:10.1186/1471-2229-6-11 |
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