Table 1

Homology between the Fragaria × ananassa unigene sequences in public database as inferred through comparisons to Genbank nr, SWISSPROT, Rosaceae ESTs and mapped peach ESTs.


nr.pep.11
sprot.fas1
Rosaceae ESTs2
mapped peach ESTs2

database size
2321663
153871
227250
256
total # sequences
1304
1304
1304
1304
# sequences with matches
1105
714
835
22
% sequences with matches
84.74%
54.75%
64.03%
1.69%
# sequences w/o matches
199
590
469
1282
% sequences w/o matches
15.26%
45.25%
35.97%
98.31%

1 FASTX3.4 Algorithm with cut-off of < 1e-6

2 BLASTN Algorithm with identity >= 85% and overlap > = 100

Folta et al. BMC Plant Biology 2005 5:12   doi:10.1186/1471-2229-5-12