BMC Plant Biology

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Validating internal controls for quantitative plant gene expression studies

Amy M Brunner*, Igor A Yakovlev and Steven H Strauss

BMC Plant Biology 2004, 4:14 doi:10.1186/1471-2229-4-14

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BioMed Central: 25 citations

Research article   Open Access

Validation of a set of reference genes to study response to herbicide stress in grasses

Cécile Petit, Fanny Pernin, Jean-Marie Heydel, Christophe Délye BMC Research Notes 2012, 5:18 (10 January 2012)

Research article   Open Access

Selection of reference genes for qPCR in hairy root cultures of peanut

Jose Condori, Cesar Nopo-Olazabal, Giuliana Medrano, Fabricio Medina-Bolivar BMC Research Notes 2011, 4:392 (10 October 2011)

Poster presentation   Open Access

Selection of reference gene in Eucalyptus camaldulensis for real-time qRT-PCR

Boby Unnikrishnan, Gurumurthy Shankaranarayan, Navin Sharma BMC Proceedings 2011, 5(Suppl 7):P125 (13 September 2011)

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The glutamine synthetase gene family in Populus

Vanessa Castro-Rodríguez, Angel García-Gutiérrez, Javier Canales, Concepción Avila, Edward G Kirby, Francisco M Cánovas BMC Plant Biology 2011, 11:119 (25 August 2011)

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Selection of reference genes for quantitative gene expression normalization in flax (Linum usitatissimum L.)

Rudy Huis, Simon Hawkins, Godfrey Neutelings BMC Plant Biology 2010, 10:71 (19 April 2010)

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Identification and evaluation of new reference genes in Gossypium hirsutum for accurate normalization of real-time quantitative RT-PCR data

Sinara Artico, Sarah M Nardeli, Osmundo Brilhante, Maria Grossi-de-Sa, Marcio Alves-Ferreira BMC Plant Biology 2010, 10:49 (21 March 2010)

Methodology article   Open Access

Monitoring the regulation of gene expression in a growing organ using a fluid mechanics formalism

Rémy Merret, Bruno Moulia, Irène Hummel, David Cohen, Erwin Dreyer, Marie-Béatrice Bogeat-Triboulot BMC Biology 2010, 8:18 (4 March 2010)

Simultaneously studying growth rates and gene expression in plant development has resulted in a new mechanistic modeling approach to quantify rates of change in a moving and expanding cell or organ.

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Genome-wide transcriptome analysis of the transition from primary to secondary stem development in Populus trichocarpa

Palitha Dharmawardhana, Amy M Brunner, Steven H Strauss BMC Genomics 2010, 11:150 (4 March 2010)

Short Report   Open Access

Selection of endogenous genes for gene expression studies in Eucalyptus under biotic (Puccinia psidii) and abiotic (acibenzolar-S-methyl) stresses using RT-qPCR

Leonardo P Boava, Marcelo L Laia, Tiago R Jacob, Karina M Dabbas, Janaína F Gonçalves, Jesus A Ferro, Maria IT Ferro, Edson L Furtado BMC Research Notes 2010, 3:43 (24 February 2010)

This article is part of a collection on Quantitative real time PCR...

Research article   Open Access

Identification of genes associated with growth cessation and bud dormancy entrance using a dormancy-incapable tree mutant

Sergio Jiménez, Zhigang Li, Gregory L Reighard, Douglas G Bielenberg BMC Plant Biology 2010, 10:25 (9 February 2010)

Research article   Open Access

Validation of reference genes for quantitative real-time PCR during leaf and flower development in Petunia hybrida

Izaskun Mallona, Sandra Lischewski, Julia Weiss, Bettina Hause, Marcos Egea-Cortines BMC Plant Biology 2010, 10:4 (7 January 2010)

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Selection of reliable reference genes for gene expression studies in peach using real-time PCR

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Research article   Open Access

Dynamic changes in transcripts during regeneration of the secondary vascular system in Populus tomentosa Carr. revealed by cDNA microarrays

Minjie Wang, Xiaoli Qi, Shutang Zhao, Shougong Zhang, Meng-Zhu Lu BMC Genomics 2009, 10:215 (11 May 2009)

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Identification and validation of reference genes for quantitative RT-PCR normalization in wheat

Anna R Paolacci, Oronzo A Tanzarella, Enrico Porceddu, Mario Ciaffi BMC Molecular Biology 2009, 10:11 (20 February 2009)

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Identification of suitable internal control genes for expression studies in Coffea arabica under different experimental conditions

Carla F Barsalobres-Cavallari, Fábio E Severino, Mirian P Maluf, Ivan G Maia BMC Molecular Biology 2009, 10:1 (6 January 2009)

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Selection of internal control genes for quantitative real-time RT-PCR studies during tomato development process

Marino Expósito-Rodríguez, Andrés A Borges, Andrés Borges-Pérez, José A Pérez BMC Plant Biology 2008, 8:131 (22 December 2008)

Research article   Open Access

Exploring valid reference genes for gene expression studies in Brachypodium distachyon by real-time PCR

Shin-Young Hong, Pil Seo, Moon-Sik Yang, Fengning Xiang, Chung-Mo Park BMC Plant Biology 2008, 8:112 (7 November 2008)

Methodology article   Open Access

Normalisation genes for expression analyses in the brown alga model Ectocarpus siliculosus

Aude Le Bail, Simon M Dittami, Pierre-Olivier de Franco, Sylvie Rousvoal, Mark J Cock, Thierry Tonon, Bénédicte Charrier BMC Molecular Biology 2008, 9:75 (18 August 2008)

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Validation of internal control for gene expression study in soybean by quantitative real-time PCR

Bo Jian, Bin Liu, Yurong Bi, Wensheng Hou, Cunxiang Wu, Tianfu Han BMC Molecular Biology 2008, 9:59 (23 June 2008)

Methodology   Open Access

A plastome primer set for comprehensive quantitative real time RT-PCR analysis of Zea mays: a starter primer set for other Poaceae species

Richard M Sharpe, Sade N Dunn, A Bruce Cahoon Plant Methods 2008, 4:14 (2 June 2008)

Methodology   Open Access Highly Accessed

A quantitative RT-PCR platform for high-throughput expression profiling of 2500 rice transcription factors

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Appropriate 'housekeeping' genes for use in expression profiling the effects of environmental estrogens in fish

Amy L Filby, Charles R Tyler BMC Molecular Biology 2007, 8:10 (8 February 2007)

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Selection of reference genes for quantitative RT-PCR studies in striped dolphin (Stenella coeruleoalba) skin biopsies

Giacomo Spinsanti, Cristina Panti, Elisa Lazzeri, Letizia Marsili, Silvia Casini, Francesco Frati, Cristina Fossi BMC Molecular Biology 2006, 7:32 (19 September 2006)

Research article   Open Access

MAP-ping genomic organization and organ-specific expression profiles of poplar MAP kinases and MAP kinase kinases

Marie-Claude Nicole, Louis-Philippe Hamel, Marie-Josée Morency, Nathalie Beaudoin, Brian E Ellis, Armand Séguin BMC Genomics 2006, 7:223 (31 August 2006)