Table 5

Peach genes located in the two-LOD confidence interval of selected QTLs and other candidate genes
QTL region Peach model (gene) Genomic location (Mb) Blastp hit in Arabidopsis E-value Description
1b ppa000228m 33.9 PKL 0 Chromatin remodelling factor PICKLE
ppa008143m 34.3 COL4 2×10-140 Zinc finger protein CONSTANS-LIKE 4
ppa003748m 34.8 HAB1 8×10-177 Protein phosphatase 2C
ppa006590m 35.0 HDA2 0 Histone deacetylase 2
ppa008979m 35.9 At5g67300 2×10-95 myb-related protein
ppa006503m 36.2 AREB1 3×10-121 ABA-responsive element binding protein 1
ppa000318m 37.0 EMF1 8×10-44 Embryonic flower 1
ppa013757m 37.6 FPF1 8×10-57 Flowering promoting factor 1
ppa000056m 39.8 EFS 0 Histone-lysine N-methyltransferase
ppa001566m 40.0 SWI3C 0 SWI/SNF complex subunit SWI3C
ppa005747m 40.8 HAM2 0 Histone acetyltransferase of the MYST family
ppa024363m 41.0 AREB3 3×10-45 ABA-responsive element binding protein 3
ppa012329m 46.0 At4g24440 3×10-68 Transcription initiation factor IIA subunit 2
ppa010714m (DAM6) 46.3 SVP 7×10-65 MADS-box protein
ppa010822m (DAM5) 46.4 SVP 1×10-62 MADS-box protein
ppa011123m (DAM4) 46.4 AGL24 2×10-60 MADS-box protein
3a ppa020502m 0.1 CCR2 2×10-19 Glycine-rich protein
ppa004975m 0.1 SDG40 0 SET domain group 40
ppa000162m 1.2 HAC1 0 Histone acetyltransferase of the CBP family
ppa013609m 1.7 At1g54070 1×10-19 Dormancy/auxin associated family protein
ppa004252m 2.4 HAB1 0 Protein phosphatase 2C
ppa002515m 3.2 ABO5 0 Pentatricopeptide repeat-containing protein
4b ppa010982m 10.4 ERF4 6×10-45 Ethylene responsive element binding factor 4
ppa022739m 10.5 SPL4 3×10-41 Squamosa promoter binding protein-like 4
ppa008301m 11.1 ANAC072 2×10-122 NAC domain-containing protein 72
ppa002986m 12.0 DFL1 0 Indole-3-acetic acid amido synthetase
6a ppa003113m 3.8 EIL3 0 Ethylene-insensitive3-like 3
ppa001557m 6.8 ARF4 0 Auxin response factor 4
ppa002082m 7.1 ARF10 0 Auxin response factor 10
6b ppa009583m 8.7 HDT3 3×10-44 Histone deacetylase 2C
ppa006053m 9.1 HDA9 0 Histone deacetylase 9
ppa007108m 11.6 HDA8 0 Histone deacetylase 8
ppa022266m 13.7 AREB3 2×10-59 ABA-responsive element binding protein 3
7b ppa024294m 12.4 ATXR4 4×10-140 Histone-lysine N-methyltransferase
ppa026273m 13.4 At5g42560 1×10-74 ABA-responsive protein (TB2/DP1, HVA22)
ppa012369m 14.3 TFL1 7×10-93 Phosphatidylethanolamine-binding protein
ppa015643m 14.5 CBF2 1×10-48 C-repeat/DRE binding factor 2
ppa009356m 14.7 HDT3 6×10-57 Histone deacetylase 2C
ppa001213m 15.4 CLF 0 Histone-lysine N-methyltransferase
ppa002248m 15.6 ABA1 0 Zeaxanthin epoxidase
ppa012239m 16.4 At4g37220 7×10-25 Cold acclimation protein WCOR413 family
ppa001803m 16.7 DDM1 0 Chromatin remodelling factor

Romeu et al.

Romeu et al. BMC Plant Biology 2014 14:52   doi:10.1186/1471-2229-14-52

Open Data