Open Access Correction

Correction: Transcriptome analysis of stem development in the tumourous stem mustard Brassica juncea var. tumida Tsen et Lee by RNA sequencing

Quan Sun1, Guanfan Zhou2, Yingfan Cai1*, Yonghong Fan2, Xiaoyan Zhu13, Yihua Liu2, Xiaohong He1, Jinjuan Shen2, Huaizhong Jiang1, Daiwen Hu2, Zheng Pan1, Liuxin Xiang1, Guanghua He3, Daiwen Dong2 and Jianping Yang1

Author Affiliations

1 College of Bioinformation, Chongqing University of Posts and Telecommunications, Chongqing 400065, China

2 Institute of Chongqing Fuling Agricultural Sciences, Fuling 408000, China

3 Chongqing Key Laboratory of Application and Safety Control of Genetically Modified Crops, Southwest University, Chongqing 400716, China

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BMC Plant Biology 2013, 13:90  doi:10.1186/1471-2229-13-90

The electronic version of this article is the complete one and can be found online at:

Received:12 June 2013
Accepted:14 June 2013
Published:17 June 2013

© 2013 Sun et al.; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.


After the publication of our study [1], we became aware of errors in the proofreading of the article that caused a description mistake in the experimental methods section. These mistakes do not affect the final information in the analysis and results.

Specifically, the following amendments to the Methods section should be noted:

1. DGE library preparation and sequencing. Methods section paragraph 9, lines 3–11 should read:

Next, the DGE library was prepared using same method as above transcriptome library construction except the fragments about 200 were selected as templates for PCR. Finally, the library was sequenced using Illumina HiSeq™ 2000. All raw read data has been deposited in SRA (NCBI).

2. DGE analysis, paragraph 10 should read:

‘The raw image data were transformed by base calling into sequence data. To map the DGE reads, the sequenced raw data were filtered to remove adaptor sequences, low-quality sequences (reads with unknown sequences ‘N’), empty reads. For reads annotation, clean reads sequences were mapped to our transcriptome reference database, allowing no more than two nucleotide mismatch. For gene expression analysis, the number of expressed sequence was calculated and normalised to the number of Reads Per Kb per Million reads (RPKM).’

3. DGE analysis, paragraph 10, lines 1–2 should read:

‘To compare the differences in gene expression, the read frequency in each DGE library was statistically analysed according to the method of Audic and Claverie’

We apologize for any inconvenience that this may have caused to the readers.


  1. Quan S, et al.: Transcriptome analysis of development of the stem in tumourous stem mustard, Brassica juncea var. tumida Tsen et Lee, by RNA sequencing.

    BMC Plant Biol 2012, 12:53. PubMed Abstract | BioMed Central Full Text | PubMed Central Full Text OpenURL