Table 2

agp6 agp11 differentially expressed genes among the MapMan BINs [29.5.11.4.3.2: protein. degradation. ubiquitin. E3. SCF. F-box], [30.2: signaling.receptor kinases], [30.3: signaling.calcium], [20.1:stress.biotic], and [20.2.1: stress.abiotic.heat]
MapMan BIN AGI locus LBFCa Gene annotationb
29.5.11.4.3.2: protein. degradation. ubiquitin. E3. SCF. F-box
Up-regulated
At1g65760 11.8 Protein of unknown function (DUF295)
At2g27520 6.63 F-box and associated interaction domains-containing protein
At5g38390 5.43 F-box/RNI-like superfamily protein
At3g52030 3.92 F-box family protein with WD40/YVTN repeat domain
At2g24080 3.52 Protein of unknown function (DUF295)
At5g27750 3.19 F-box/FBD-like domains containing protein
At3g49520 2.79 F-box and associated interaction domains-containing protein
At1g70360 2.65 F-box family protein
At3g17710 2.40 F-box and associated interaction domains-containing protein
At2g17020 2.25 F-box/RNI-like superfamily protein
At3g13820 2.08 F-box and associated interaction domains-containing protein
At2g03580 1.99 F-box family protein-related
At5g03000 1.75 Galactose oxidase/kelch repeat superfamily protein
At1g06630 1.71 F-box/RNI-like superfamily protein
At3g50080 1.61 VFB2, VIER F-box proteine 2
At5g60610 1.55 F-box/RNI-like superfamily protein
At3g18980 1.50 EIN2 targeting protein1 (ETP1)
At3g59000 1.44 F-box/RNI-like superfamily protein
At2g07120 1.38 F-box associated ubiquitination effector family protein
At5g49610 1.36 F-box family protein
At1g55590 1.35 RNI-like superfamily protein
At1g23780 1.34 F-box family protein
Down-regulated
At5g43190 −7.32 Galactose oxidase/kelch repeat superfamily protein
At1g68050 −4.00 “Flavin-binding, kelch repeat, F-box 1”
At1g12490 −3.55 F-box associated ubiquitination effector family protein
At1g55000 −1.99 Peptidoglycan-binding LysM domain-containing protein
At1g78840 −1.96 F-box/RNI-like/FBD-like domains-containing protein
At2g25490 −1.58 EIN3-binding F-box protein 1
At4g04690 −1.52 F-box and associated interaction domains-containing protein
At1g70590 −1.44 F-box family protein
30.2: signaling. receptor kinases
Up-regulated
At4g23280 2.27 Cysteine-rich RLK (RECEPTOR-like protein kinase) 20
At3g21970 2.22 Domain of unknown function (DUF26)
At5g40380 1.33 Cysteine-rich RLK (RECEPTOR-like protein kinase) 42
At4g20790 1.76 Leucine-rich repeat protein kinase family protein
At3g24550 1.61 Proline extensin-like receptor kinase 1
At4g28670 1.41 Protein kinase family protein with domain of unknown function (DUF26)
At5g23170 1.35 Protein kinase superfamily protein
Down-regulated
At4g20530 −7.70 Receptor-like protein kinase-related
At5g59650 −3.61 Leucine-rich repeat protein kinase family protein
At4g02420 −2.87 Concanavalin A-like lectin protein kinase family protein
At1g11280 −2.01 S-locus lectin protein kinase family protein
At1g61380 −1.73 S-domain-1 29
30.3: signaling. calcium
Up-regulated
At1g18890 2.66 Calcium-dependent protein kinase 1
At5g19360 2.30 Calcium-dependent protein kinase 34
At5g62390 1.57 BCL-2-associated athanogene 7
At4g20780 1.48 Calmodulin-like 42 Calcium; sensor involved in trichome branching
At1g05150 1.44 Calcium-binding tetratricopeptide family protein
At5g42380 1.40 Calmodulin-like 37
At1g51960 1.38 IQ-domain 27
At5g47100 1.31 Calcineurin B-like protein 9
Down-regulated
At1g18530 −1.89 EF hand calcium-binding protein family
At5g55990 −1.88 Calcineurin B-like protein 2
At2g33990 −1.68 IQ-domain 9
At1g62480 −1.54 Vacuolar calcium-binding protein-related
At2g41410 −1.48 Calcium-binding EF-hand family protein
At4g34150 −1.33 Calcium-dependent lipid-binding (CaLB domain) family protein
20.1: stress. biotic
Up-regulated
At2g19970 23.34 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
At3g02840 2.56 ARM repeat superfamily protein
At4g16920 2.52 Disease resistance protein (TIR-NBS-LRR class) family
At1g32210 1.78 Defender against death (DAD family) protein
At2g35520 1.77 Defender against death (DAD family) protein
Down-regulated
At4g09950 −25.77 P-loop containing nucleoside triphosphate hydrolases superfamily protein
At3g44400 −6.01 Disease resistance protein (TIR-NBS-LRR class) family
At4g16860 −4.48 Disease resistance protein (TIR-NBS-LRR class) family
At1g75040 −2.63 Pathogenesis-related gene 5
At3g18690 −1.88 MAP kinase substrate 1
At1g14530 −1.82 TOM THREE HOMOLOG 1 (THH1); Protein of unknown function DUF1084
At1g58170 −1.59 Disease resistance-responsive (dirigent-like protein) family protein
At2g25240 −1.41 Serine protease inhibitor (SERPIN) family protein
20.2.1: stress. abiotic. heat
Up-regulated
At1g28210 2.40 DNAJ heat shock family protein
At3g22530 1.97 Unknown protein
At1g72070 1.50 Chaperone DnaJ-domain superfamily protein
Down-regulated
At2g29500 −4.93 HSP20-like chaperones superfamily protein
At3g46230 −1.92 Heat shock protein 17.4
At5g12030 −1.84 Heat shock protein 17.6A
At1g79920 −1.84 Heat shock protein 70 (Hsp 70) family protein
At1g59860 −1.78 HSP20-like chaperones superfamily protein
At5g22060 −1.65 DNAJ homologue 2
At1g71000 −1.49 Chaperone DnaJ-domain superfamily protein
At2g03020 −1.49 Heat shock protein HSP20/alpha crystallin family
At4g13830 −1.43 DNAJ-like 20
At5g02500 −1.41 Heat shock cognate protein 70-1
At1g53540 −1.34 HSP20-like chaperones superfamily protein

aagp6 agp11 to wild type lower bound of fold change.

b TAIR annotations [14].

Costa et al.

Costa et al. BMC Plant Biology 2013 13:7   doi:10.1186/1471-2229-13-7

Open Data