Open Access Research article

Characterization of a new high copy Stowaway family MITE, BRAMI-1 in Brassica genome

Perumal Sampath1, Sang-Choon Lee1, Jonghoon Lee1, Nur Kholilatul Izzah1, Beom-Soon Choi2, Mina Jin3, Beom-Seok Park3 and Tae-Jin Yang1*

Author Affiliations

1 Dept. of Plant Science, Plant Genomics and Breeding Institute, and Research Institute for Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, 151-921, Republic of Korea

2 National Instrumentation Center for Environmental Management, College of Agriculture and Life Sciences, Seoul National University, Seoul, 151-921, Republic of Korea

3 National Academy of Agricultural Science, Rural Development Administration, 150 Suinro, Suwon, 441-707, Republic of Korea

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BMC Plant Biology 2013, 13:56  doi:10.1186/1471-2229-13-56

Published: 2 April 2013

Additional files

Additional file 1:

Physical position of the 697 members in the B. rapa genome.

Format: XLSX Size: 76KB Download file

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Additional file 2:

List of Primers used for MITE insertion polymorphism analysis.

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Additional file 3:

Phylogenetic analysis of MIPs. Dendrogram based on Jaccard’s similarity coefficient of 50 MIPs among eight genotypes constructed using the UPGMA method.

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Additional file 4:

MIP survey of 94 B. oleracea F2 plants from a cross between parental lines C1234 (P1) and C1184 (P2). The primer MIP-M1-19 was used and a ratio of 22:50:21 was observed for genotypes P1: P1/P2 : P2.

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