Table 4

Statistical analysis (Fisher’s exact test) of the over or under representation of GO categories in the overS (iii) data set derived from the transcriptome of leaves from susceptible branches of a mosaic Eucalyptus melliodora tree
GO Term Name Type FDR p-Value Over/Under
GO:0010468 regulation of gene expression P 0.01 0.00 +
GO:0019222 regulation of metabolic process P 0.01 0.00 +
GO:0040029 regulation of gene expression, epigenetic P 0.01 0.00 +
GO:0060255 regulation of macromolecule metabolic process P 0.01 0.00 +
GO:0005840 ribosome C 0.01 0.00 -
GO:0030529 ribonucleoprotein complex C 0.01 0.00 -
GO:0005198 structural molecule activity F 0.03 0.00 -
GO:0005488 binding F 0.03 0.00 +
GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process P 0.04 0.00 +
GO:0006807 nitrogen compound metabolic process P 0.04 0.00 +
GO:0034641 cellular nitrogen compound metabolic process P 0.04 0.00 +
GO:0009719 response to endogenous stimulus P 0.06 0.00 +
GO:0000166 nucleotide binding F 0.07 0.00 +
GO:0043226 organelle C 0.07 0.00 -
GO:0005622 intracellular C 0.09 0.01 -
GO:0043229 intracellular organelle C 0.09 0.01 -
GO:0044444 cytoplasmic part C 0.10 0.01 -
GO:0006412 translation P 0.10 0.01 -
GO:0009059 macromolecule biosynthetic process P 0.10 0.01 -
GO:0034645 cellular macromolecule biosynthetic process P 0.10 0.01 -
GO:0044249 cellular biosynthetic process P 0.10 0.01 -
GO:0044424 intracellular part C 0.12 0.01 -
GO:0005737 cytoplasm C 0.13 0.01 -
GO:0044464 cell part C 0.13 0.01 -
GO:0043412 macromolecule modification P 0.15 0.02 +
GO:0016788 hydrolase activity, acting on ester bonds F 0.15 0.02 +
GO:0016301 kinase activity F 0.15 0.03 +
GO:0016772 transferase activity, transferring phosphorus-containing groups F 0.15 0.03 +
GO:0003774 motor activity F 0.15 0.03 +
GO:0016462 pyrophosphatase activity F 0.15 0.03 +
GO:0016817 hydrolase activity, acting on acid anhydrides F 0.15 0.03 +
GO:0016818 hydrolase activity, acting on acid anhydrides, F 0.15 0.03 +
GO:0017111 nucleoside-triphosphatase activity F 0.15 0.03 +
GO:0032501 multicellular organismal process P 0.15 0.03 +
GO:0043227 membrane-bounded organelle C 0.15 0.02 -
GO:0043231 intracellular membrane-bounded organelle C 0.15 0.02 -
GO:0043228 non-membrane-bounded organelle C 0.15 0.03 -
GO:0043232 intracellular non-membrane-bounded organelle C 0.15 0.03 -
GO:0006464 protein modification process P 0.19 0.03 +
GO:0007275 multicellular organismal development P 0.20 0.04 +
GO:0004721 phosphoprotein phosphatase activity F 0.20 0.04 +
GO:0016791 phosphatase activity F 0.20 0.04 +
GO:0042578 phosphoric ester hydrolase activity F 0.20 0.04 +
GO:0032991 macromolecular complex C 0.20 0.04 -
GO:0050896 response to stimulus P 0.21 0.04 +
GO:0032502 developmental process P 0.21 0.05 +
GO:0009058 biosynthetic process P 0.21 0.04 -

Type refers to the GO category type: F = molecular function, P = biological processes and C = cellular component. FDR refers to the false discovery rate (FDR)- corrected p-value and the thick horizontal line shows a significance level of 0.05 FDR. p-Value refers to single test p-value. In the over/under column, + signifies over-represented categories and – signifies under-represented categories when compared to the reference data set (i).

Padovan et al.

Padovan et al. BMC Plant Biology 2013 13:29   doi:10.1186/1471-2229-13-29

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