Table 5

Twenty most differentially expressed genes with higher expression in CSS stage relative to OLD stage
Accession Gene annotation1 CSS/OLD Fold-change2 q-value3
AT1G12845 unknown protein 10.1 4.1E-02
AT5G20630 GERMIN 3 (GER3) 6.5 1.6E-02
AT3G07010 pectate lyase family protein 6.3 7.8E-03
AT1G72610 GERMIN-LIKE PROTEIN 1 (GER1) 6.2 4.0E-02
AT1G64660 ARABIDOPSIS THALIANA METHIONINE GAMMA-LYASE (ATMGL) 5.7 9.6E-03
AT3G15720 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein 5.3 3.5E-02
AT1G80280 hydrolase, alpha/beta-fold family protein 5.3 3.4E-02
AT1G68600 unknown protein 5.0 4.3E-02
AT5G38430 ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) 4.8 4.3E-02
AT2G39010 PLASMA MEMBRANE INTRINSIC PROTEIN 2E (PIP2E) 4.8 2.2E-02
AT2G38540 LIPID TRANSFER PROTEIN 1 (LTP1) 4.7 2.8E-02
AT3G16240 DELTA TONOPLAST INTEGRAL PROTEIN (DELTA-TIP) 4.7 2.2E-02
AT4G03205 coproporphyrinogen oxidase activity in porphyrin biosynthetic process within chloroplast 4.4 3.9E-02
AT3G48970 copper-binding family protein in metal ion transport 4.3 4.9E-02
AT1G75900 family II extracellular lipase 3 (EXL3), carboxylesterase activity, acyltransferase activity 4.3 1.5E-02
AT2G05790 glycosyl hydrolase family 17 protein 4.2 7.8E-03
AT5G38420 ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B) 4.2 4.1E-02
AT1G68560 ALPHA-XYLOSIDASE 1 (XYL1) 4.2 4.1E-02
AT5G22580 unknown protein 4.2 2.8E-02
AT3G12610 DNA-DAMAGE REPAIR/TOLERATION 100 (DRT100) 4.1 2.2E-02

1Gene descriptions are abbreviated from TAIR10 genome release. Putative functions are stated in lowercase.

2Genes ranked according to fold-change values derived from log2 ratios of CSS (numerator) and OLD (denominator).

3 Derived from false discovery-rate correction of p-values.

Hall and Ellis

Hall and Ellis BMC Plant Biology 2013 13:14   doi:10.1186/1471-2229-13-14

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